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BaseInfo

ncRNA ID	novel_zma_miR7471
Species	Zea mays
Class	miRNA
Genome position	Chr6:149668540-149668683 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GAUUUAGGGCCUGUUUGGUGGGCU - 24
Stem-loop(if miRNA)	---G   U          UGG         -   --         C A    A     -    U    ---C          AUU AGGGCCUGUU   UGGGCUGGC UCG  GACGUCAUA C UGCC CACUC CGGC GCCG    GGGUGU     ||| ||||||||||   ||||||||| |||  ||||||||| | |||| ||||| |||| ||||    |||||G     UAA UUCCGGACAA   ACCUGGCUG GGC  CUGCGGUAU G ACGG GUGGG GUCG CGGC    CCCGCG CGCA   U          ---         C   AU         C C    C     C    C    UAAA
Stem-loop sequence	GAUUUAGGGCCUGUUUGGUGGGCUGGCUCGGACGUCAUACCAUGCCACACUCCGGCUGCCGCGGGUGUGGCGCCCAAAUCGGCCGCUGCGGGUGCGGCACGCUAUGGCGUCUACGGCGUCGGUCCAAACAGGCCUUUAAUACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ114321.1	ncRNA:24   UCGG-GUGGUUUGUCCGGGAUUUAG   1   |||=-==|||||||||||||||||| targets:63   AGCUGUGCCAAACAGGCCCUAAAUC   87 Target Full Sequence	1.0	TSA: Zea mays contig49982, mRNA sequence	NA	coding protein	psRNATarget
XM_008676327.2	ncRNA:24   UCGG-GUGGUUUGUCCGGGAUUUAG   1   *|||-|||||||||*|||||||||* targets:1860   CGCCACACCAAACAUGCCCUAAAUG   1884 Target Full Sequence	2.5	PREDICTED: Zea mays crossover junction endonuclease MUS81 (LOC103650756), mRNA	NA	coding protein	psRNATarget
XM_008663462.2	ncRNA:24   UCGGGUGGUUUGUCCGGGAUUUAG   1   ||*|*||||||||||||*|||||* targets:2664   AGACAACCAAACAGGCCAUAAAUG   2687 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100274870), transcript variant X3, mRNA	NA	coding protein	psRNATarget