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BaseInfo

ncRNA ID novel_zma_miR7470
Species Zea mays
Class miRNA
Genome position Chr1:69597039-69597132 [-]
Reference genome RefGen_v4
Source SRR1743455
Length 24
Mature sequence(if miRNA) 1 - AAUCUCACUCAAUUCAUAUGGAUU - 24
Stem-loop(if miRNA) --UA  C         A          AAAAA     AA    UUUA
    CA AUGGAUUGA UGAGAUUGGA     UUAAG  GAGA    A
    || ||||||||| ||||||||||     |||||  ||||
    GU UACUUAACU ACUCUAAUCU     AAUUU  CUUU    C
UUAG  A         C          ACCUA     AG    CGUU
Stem-loop sequence UACACAUGGAUUGAAUGAGAUUGGAAAAAAUUAAGAAGAGAUUUAACUUGCUUUCGAUUUAAAUCCAUCUAAUCUCACUCAAUUCAUAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT039694.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||||||||||||||=||||
targets:1663   AAUCCAUAUGAAUUGAGUGGGAUU   1686

1.5 Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds NA coding protein psRNATarget
NM_001147345.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||||||||||||||=||||
targets:1663   AAUCCAUAUGAAUUGAGUGGGAUU   1686

1.5 Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA NA coding protein psRNATarget
BT062929.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||||||||||||||=||||
targets:1562   AAUCCAUAUGAAUUGAGUGGGAUU   1585

1.5 Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds NA coding protein psRNATarget
EU956028.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||||||||||||||=||||
targets:1473   AAUCCAUAUGAAUUGAGUGGGAUU   1496

1.5 Zea mays clone 1555850 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT040208.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:1298   AAUCCAUAUGGAUUGAGUGAGAUU   1321

1.0 Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds NA coding protein psRNATarget
XM_020550075.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:733   AAUCCAUAUGGAUUGAGUGAGAUU   756

1.0 PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550074.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:725   AAUCCAUAUGGAUUGAGUGAGAUU   748

1.0 PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X1, mRNA NA coding protein psRNATarget
HI405896.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35

1.0 Sequence 4021 from Patent EP2074227 NA coding protein psRNATarget
LQ238026.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35

1.0 Sequence 4021 from Patent EP2985353 NA coding protein psRNATarget
JB166357.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=|||||||||||||
targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35

1.0 Sequence 4021 from Patent EP2559767 NA coding protein psRNATarget
EZ097020.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||||||||||||||||
targets:58   AAUCCAUGUGAAUUGAGUGAGAUU   81

1.0 TSA: Zea mays contig32675, mRNA sequence NA coding protein psRNATarget
EU962683.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:1544   AAUCCAUGUGGAUUGAGUGAGAUU   1567

2.0 Zea mays clone 244714 mRNA sequence NA coding protein psRNATarget
AY109413.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:1579   AAUCCAUGUGGAUUGAGUGAGAUU   1602

2.0 Zea mays CL2362_1 mRNA sequence NA coding protein psRNATarget
BT039499.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:1473   AAUCCAUGUGGAUUGAGUGAGAUU   1496

2.0 Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds NA coding protein psRNATarget
NM_001147267.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:1473   AAUCCAUGUGGAUUGAGUGAGAUU   1496

2.0 Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA NA coding protein psRNATarget
BT088422.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:297   AAUUCAUAUGGAUUGAGUGAGAUU   320

1.0 Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds NA coding protein psRNATarget
NM_001196996.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:297   AAUUCAUAUGGAUUGAGUGAGAUU   320

1.0 Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA NA coding protein psRNATarget
XM_020542404.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:1159   AAUUCAUAUGGAUUGAGUGAGAUU   1182

1.0 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542405.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:1149   AAUUCAUAUGGAUUGAGUGAGAUU   1172

1.0 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008657652.2
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:1081   AAUUCAUAUGGAUUGAGUGAGAUU   1104

1.0 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008657650.2
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:1039   AAUUCAUAUGGAUUGAGUGAGAUU   1062

1.0 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657651.2
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:960   AAUUCAUAUGGAUUGAGUGAGAUU   983

1.0 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA NA coding protein psRNATarget
EU957313.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:667   AAUCCAUGUGGAUUGAGUGAGAUU   690

2.0 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:667   AAUCCAUGUGGAUUGAGUGAGAUU   690

2.0 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
EU942632.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:189   AAUCCAUGUGGAUUGAGUGAGAUU   212

2.0 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
JB166347.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:26   AAUCCAUGUGGAUUGAGUGAGAUU   49

2.0 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
HI405886.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:26   AAUCCAUGUGGAUUGAGUGAGAUU   49

2.0 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
LQ238016.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:26   AAUCCAUGUGGAUUGAGUGAGAUU   49

2.0 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
HI405880.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 4005 from Patent EP2074227 NA coding protein psRNATarget
JB166341.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 4005 from Patent EP2559767 NA coding protein psRNATarget
LQ237970.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
LQ238010.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 4005 from Patent EP2985353 NA coding protein psRNATarget
JB166301.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
HI405840.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
JB166348.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:25   AAUCCAUGUGGAUUGAGUGAGAUU   48

2.0 Sequence 4012 from Patent EP2559767 NA coding protein psRNATarget
JB166297.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3961 from Patent EP2559767 NA coding protein psRNATarget
LQ237966.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3961 from Patent EP2985353 NA coding protein psRNATarget
HI405887.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:25   AAUCCAUGUGGAUUGAGUGAGAUU   48

2.0 Sequence 4012 from Patent EP2074227 NA coding protein psRNATarget
LQ238017.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:25   AAUCCAUGUGGAUUGAGUGAGAUU   48

2.0 Sequence 4012 from Patent EP2985353 NA coding protein psRNATarget
HI405836.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:23   AAUCCAUGUGGAUUGAGUGAGAUU   46

2.0 Sequence 3961 from Patent EP2074227 NA coding protein psRNATarget
LQ242020.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:4   AAUCCAUGUGGAUUGAGUGAGAUU   27

2.0 Sequence 8015 from Patent EP2985353 NA coding protein psRNATarget
HI409890.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:4   AAUCCAUGUGGAUUGAGUGAGAUU   27

2.0 Sequence 8015 from Patent EP2074227 NA coding protein psRNATarget
JB170351.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=||=|||||||||||||
targets:4   AAUCCAUGUGGAUUGAGUGAGAUU   27

2.0 Sequence 8015 from Patent EP2559767 NA coding protein psRNATarget
LQ238086.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||||=||||
targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27

2.5 Sequence 4081 from Patent EP2985353 NA coding protein psRNATarget
JB166417.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||||=||||
targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27

2.5 Sequence 4081 from Patent EP2559767 NA coding protein psRNATarget
HI405956.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||||=||||
targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27

2.5 Sequence 4081 from Patent EP2074227 NA coding protein psRNATarget
LQ242290.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30

1.0 Sequence 8285 from Patent EP2985353 NA coding protein psRNATarget
JB170621.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30

1.0 Sequence 8285 from Patent EP2559767 NA coding protein psRNATarget
HI410160.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||=||||||=|||||||||||||
targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30

1.0 Sequence 8285 from Patent EP2074227 NA coding protein psRNATarget
AF277454.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||*|||||||||||||
targets:1634   AAUCCAUAUGUAUUGAGUGAGAUU   1657

1.0 Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds NA coding protein psRNATarget
NM_001112411.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||*|||||||||||||
targets:1634   AAUCCAUAUGUAUUGAGUGAGAUU   1657

1.0 Zea mays uncharacterized LOC732794 (IDP506), mRNA NA coding protein psRNATarget
LQ238773.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||*||||||
targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51

2.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
HI406643.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||*||||||
targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51

2.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
JB167104.1
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  ||||||||||=||||||*||||||
targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51

2.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
XM_008680050.2
ncRNA:24   UUAGGUAUACUUAACUCACUCUAA   1
  |||||||=|*=|||||||||||||
targets:1667   AAUCCAUGUAGAUUGAGUGAGAUU   1690

3.0 PREDICTED: Zea mays sphingoid long-chain bases kinase 1 (LOC103653085), mRNA NA coding protein psRNATarget
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