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BaseInfo

ncRNA ID	novel_zma_miR7466
Species	Zea mays
Class	miRNA
Genome position	Chr6:106935922-106936033 [-]
Reference genome	RefGen_v4
Source	SRR2647467
Length	23
Mature sequence(if miRNA)	1 - CAUGAUCUAUGGCGCCGAGCUCU - 23
Stem-loop(if miRNA)	--U              GC            G AC    UG  CU   -A  -A  A    GCUCGGCGUCAUAG  UAUGGCGCCGAG U  GUGU  CG  GGC  CA  AC G    ||||||||||||||  |||||||||||| |  ||||  ||  |||  ||  ||    CGAGCCGCGGUAUC  GUACCGCGGCUC A  CAUA  GU  UCG  GU  UG A UCU              UA            G AC    GU  AG   CG  GC  C
Stem-loop sequence	UGCUCGGCGUCAUAGGCUAUGGCGCCGAGGUACGUGUUGCGCUGGCACAAACAGACGUCGUGGCGCUGAUGUGAUACCAAGCUCGGCGCCAUGAUCUAUGGCGCCGAGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008666663.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:782   CGAGCUCGGCGCCAUAGAUCUUG   804 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:130   CGAGCUCGGCGCCAUAGAUCUUG   152 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:1222   CGAGCUCGGCGCCAUAGAUCUUG   1244 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:128   CGAGCUCGGCGCCAUAGAUCUUG   150 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:1220   CGAGCUCGGCGCCAUAGAUCUUG   1242 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:188   CGAGCUCGGCGCCAUAGAUCUUG   210 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:1279   CGAGCUCGGCGCCAUAGAUCUUG   1301 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:188   CGAGCUCGGCGCCAUAGAUCUUG   210 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|||||||||||||||||||*|| targets:1279   CGAGCUCGGCGCCAUAGAUCUUG   1301 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166443.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *||*||||||||||||||||*|| targets:64   CGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *||*||||||||||||||||*|| targets:64   CGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *||*||||||||||||||||*|| targets:64   CGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =|=|*|||||||||||||||*|| targets:63   GGGGGUCGGCGCCAUAGAUCUUG   85 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =|=|*|||||||||||||||*|| targets:183   GGGGGUCGGCGCCAUAGAUCUUG   205 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =|=|*|||||||||||||||*|| targets:129   GGGGGUCGGCGCCAUAGAUCUUG   151 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =|=|*|||||||||||||||*|| targets:129   GGGGGUCGGCGCCAUAGAUCUUG   151 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:1756   ACAUCUCGGCGCCAUAGAUCUUG   1778 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:1781   ACAUCUCGGCGCCAUAGAUCUUG   1803 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:1788   ACAUCUCGGCGCCAUAGAUCUUG   1810 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   *|=|*|||||||||||||||*|| targets:291   CGGGGUCGGCGCCAUAGAUCUUG   313 Target Full Sequence	2.5	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:282   ACAUCUCGGCGCCAUAGAUCUUG   304 Target Full Sequence	1.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:1674   ACAUCUCGGCGCCAUAGAUCUUG   1696 Target Full Sequence	1.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   |*|*||||||||||||||||*|| targets:1674   ACAUCUCGGCGCCAUAGAUCUUG   1696 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:3   GUACCUCGGCGCCAUAGAUCUUG   25 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:4   GUACCUCGGCGCCAUAGAUCUUG   26 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:161   GUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:161   GUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:161   GUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:165   GUACCUCGGCGCCAUAGAUCUUG   187 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:165   GUACCUCGGCGCCAUAGAUCUUG   187 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:230   GUACCUCGGCGCCAUAGAUCUUG   252 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:23   UCUCGAGCCGCGGUAUCUAGUAC   1   =*|*||||||||||||||||*|| targets:937   GUACCUCGGCGCCAUAGAUCUUG   959 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget