Search result

BaseInfo

ncRNA ID	novel_zma_miR7461
Species	Zea mays
Class	miRNA
Genome position	Chr5:192010653-192010749 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	23
Mature sequence(if miRNA)	75 - UAAUCUGGGUAGAUUAUAAUCCC - 97
Stem-loop(if miRNA)	--                                             A   GAUUAUAAUCUACCCAGAUUAUAUAAUCCAAUAAUUUUUGAACUA G   ||||||||||||||||||||||||||||||||||||||||||||| A   CUAAUAUUAGAUGGGUCUAAUAUAUUAGGUUGUUGAAAACUUGAU G CC                                             U
Stem-loop sequence	GAUUAUAAUCUACCCAGAUUAUAUAAUCCAAUAAUUUUUGAACUAAGAGUUAGUUCAAAAGUUGUUGGAUUAUAUAAUCUGGGUAGAUUAUAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548752.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||||||||||||| targets:27   GGGAUUAUAAUCUACCCAGAUUA   49 Target Full Sequence	0.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939242), mRNA	NA	coding protein	psRNATarget
XM_008661345.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||||||||||||=||||||||| targets:3260   AGGAUUAUAAUCUGCCCAGAUUA   3282 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
EU945179.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||||||||||||=||||||||| targets:849   AGGAUUAUAAUCUGCCCAGAUUA   871 Target Full Sequence	1.5	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||||||||||||=||||||||| targets:902   AGGAUUAUAAUCUGCCCAGAUUA   924 Target Full Sequence	1.5	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||||||||||||=||||||||| targets:269   AGGAUUAUAAUCUGCCCAGAUUA   291 Target Full Sequence	1.5	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
HI406797.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget
HI406776.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
JB167237.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
JB167258.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:22   CCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||=||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget
EZ104714.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   ||||||||||||||*|||||||| targets:42   GGGAUUAUAAUCUAGCCAGAUUA   64 Target Full Sequence	1.5	TSA: Zea mays contig40371, mRNA sequence	NA	coding protein	psRNATarget
BT069856.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   **||||||||||||||||||||| targets:627   CAGAUUAUAAUCUACCCAGAUUA   649 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0305N24 mRNA, complete cds	NA	coding protein	psRNATarget
JB167517.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*||||||||||||=|||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUA   31 Target Full Sequence	1.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*||||||||||||=|||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUA   31 Target Full Sequence	1.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
HI407056.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*||||||||||||=|||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUA   31 Target Full Sequence	1.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008649350.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*|||*|||||||||=||||||| targets:1105   GAGAUAAUAAUCUACUCAGAUUA   1127 Target Full Sequence	2.5	PREDICTED: Zea mays Short-chain dehydrogenase/reductase SDRA (LOC100273876), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962485.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*|||*|||||||||=||||||| targets:1003   GAGAUAAUAAUCUACUCAGAUUA   1025 Target Full Sequence	2.5	Zea mays clone 243099 dehydrogenase/reductase SDR family member 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT069962.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*|||*|||||||||=||||||| targets:949   GAGAUAAUAAUCUACUCAGAUUA   971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0335L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU958180.1	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||*||||||||*|||||||||| targets:1533   CGGCUUAUAAUCAACCCAGAUUA   1555 Target Full Sequence	1.5	Zea mays clone 1677156 WD-repeat protein-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301476.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||*||||||||*|||||||||| targets:1532   CGGCUUAUAAUCAACCCAGAUUA   1554 Target Full Sequence	1.5	Zea mays uncharacterized WD repeat-containing protein C2A9.03-like (LOC103638309), mRNA	NA	coding protein	psRNATarget
AY108826.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   *||*||||||||*|||||||||| targets:440   CGGCUUAUAAUCAACCCAGAUUA   462 Target Full Sequence	1.5	Zea mays PCO135885 mRNA sequence	NA	coding protein	psRNATarget
XM_008664166.2	ncRNA:23   CCCUAAUAUUAGAUGGGUCUAAU   1   |*|*|||||||||*||||||||| targets:1933   GUGUUUAUAAUCUCCCCAGAUUA   1955 Target Full Sequence	1.5	PREDICTED: Zea mays trigger factor-like protein TIG, Chloroplastic (LOC103640683), transcript variant X1, mRNA	NA	coding protein	psRNATarget