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BaseInfo

ncRNA ID	novel_zma_miR7454
Species	Zea mays
Class	miRNA
Genome position	Chr5:35330611-35330696 [-]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	1 - AUCCAAUCUCAUUCAAUCCACAUG - 24
Stem-loop(if miRNA)	--CA   U               AAAAAUUGAGAA   GUUUGACUU     UGG UUGGAUGGGAUUGGA            GAG         G     ||| |||||||||||||||            |||         U     ACC AACUUACUCUAACCU            CAA         U GUAC   U               ---------ACA   ACUUAGGGU
Stem-loop sequence	CAUGGUUUGGAUGGGAUUGGAAAAAAUUGAGAAGAGGUUUGACUUGUUUGGGAUUCAAACACAUCCAAUCUCAUUCAAUCCACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658927.2	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||||||||||||||||||||||| targets:333   CAUGUGGAUUGAAUGAGAUUGGAU   356 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
JB170351.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2559767	NA	coding protein	psRNATarget
HI409890.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242020.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238017.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2985353	NA	coding protein	psRNATarget
JB166348.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2559767	NA	coding protein	psRNATarget
HI405887.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2074227	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238010.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2985353	NA	coding protein	psRNATarget
JB166341.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2559767	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
HI405880.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
HI405886.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
JB166347.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:193   CAUGUGGAUUGAGUGAGAUUGGAU   216 Target Full Sequence	1.5	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:671   CAUGUGGAUUGAGUGAGAUUGGAU   694 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
EU957313.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:671   CAUGUGGAUUGAGUGAGAUUGGAU   694 Target Full Sequence	1.5	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109413.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:1583   CAUGUGGAUUGAGUGAGAUUGGAU   1606 Target Full Sequence	1.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
EU962683.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   ||||||||||||=||||||||||| targets:1548   CAUGUGGAUUGAGUGAGAUUGGAU   1571 Target Full Sequence	1.5	Zea mays clone 244714 mRNA sequence	NA	coding protein	psRNATarget
LQ238877.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||||||=|||||||| targets:10   CAUAUGGAUUGAAUGGGAUUGGAU   33 Target Full Sequence	1.5	Sequence 4872 from Patent EP2985353	NA	coding protein	psRNATarget
JB167208.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||||||=|||||||| targets:10   CAUAUGGAUUGAAUGGGAUUGGAU   33 Target Full Sequence	1.5	Sequence 4872 from Patent EP2559767	NA	coding protein	psRNATarget
HI406747.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||||||=|||||||| targets:10   CAUAUGGAUUGAAUGGGAUUGGAU   33 Target Full Sequence	1.5	Sequence 4872 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238026.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*||||||||=||||||||||| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2985353	NA	coding protein	psRNATarget
HI405896.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*||||||||=||||||||||| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2074227	NA	coding protein	psRNATarget
JB166357.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*||||||||=||||||||||| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2559767	NA	coding protein	psRNATarget
EU959169.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||||||=|||||||| targets:657   CAUAUGGAUUGAAUGGGAUUGGAU   680 Target Full Sequence	1.5	Zea mays clone 211416 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149888.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||||||=|||||||| targets:657   CAUAUGGAUUGAAUGGGAUUGGAU   680 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275986 (LOC100275986), mRNA	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*||||||||=||||||||||| targets:301   CAUAUGGAUUGAGUGAGAUUGGAU   324 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*||||||||=||||||||||| targets:301   CAUAUGGAUUGAGUGAGAUUGGAU   324 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
HI406849.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39 Target Full Sequence	2.5	Sequence 4974 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238979.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39 Target Full Sequence	2.5	Sequence 4974 from Patent EP2985353	NA	coding protein	psRNATarget
JB167310.1	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39 Target Full Sequence	2.5	Sequence 4974 from Patent EP2559767	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:183   CAUAUGGAUUGGAUGAGAUUGGAA   206 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:885   CAUAUGGAUUGGAUGAGAUUGGAA   908 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:1748   CAUAUGGAUUGGAUGAGAUUGGAA   1771 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   GUACACCUAACUUACUCUAACCUA   1   |||*|||||||=|||||||||||* targets:1764   CAUAUGGAUUGGAUGAGAUUGGAA   1787 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget