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BaseInfo

ncRNA ID novel_zma_miR7452
Species Zea mays
Class miRNA
Genome position Chr5:70726487-70726543 [-]
Reference genome RefGen_v4
Source SRR2647467
Length 24
Mature sequence(if miRNA) 34 - GAUUUCUAUUUUUCCAAGGGAAAU - 57
Stem-loop(if miRNA) --                       UUA
  GAUUUCUAUUUUUCCAAGGGAAA   G
  |||||||||||||||||||||||   U
  UUAAAGAUAAAAAGGUUCCCUUU   U
CC                       UAA
Stem-loop sequence GAUUUCUAUUUUUCCAAGGGAAAUUAGUUAAUUUUCCCUUGGAAAAAUAGAAAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU957492.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  |||||||||||=||||||||||||
targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770

1.5 Zea mays clone 1594874 mRNA sequence NA coding protein psRNATarget
BT085017.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||==||||||||||||||||||
targets:1515   AUUUUUCUUGGAAAAAUAGAAAUC   1538

1.0 Zea mays full-length cDNA clone ZM_BFb0227H04 mRNA, complete cds NA coding protein psRNATarget
AF023159.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||==|||||||||||=||||||
targets:5547   AUUUUUCUUGGAAAAAUGGAAAUC   5570

2.5 Zea mays starch synthase DULL1 (dull1) mRNA, complete cds NA coding protein psRNATarget
XM_020541969.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||=||||||=||||||||||||
targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828

1.5 PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547541.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||||||||*||||||=||||||
targets:1932   AUUUCCCUUGAAAAAAUGGAAAUC   1955

2.5 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001147050.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||==||||||||||||*|||||
targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791

2.5 Zea mays hypothetical protein (LOC100272587), mRNA NA coding protein psRNATarget
BT038997.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||==||||||||||||*|||||
targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791

2.5 Zea mays full-length cDNA clone ZM_BFb0348F03 mRNA, complete cds NA coding protein psRNATarget
XM_020550095.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *||||||||*||||||||*|||||
targets:178   UUUUCCCUUAGAAAAAUAAAAAUC   201

2.5 PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA NA coding protein psRNATarget
EU946703.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *||||=|||||||||||||*||||
targets:438   UUUUCUCUUGGAAAAAUAGUAAUC   461

2.5 Zea mays clone 322886 mRNA sequence NA coding protein psRNATarget
BT034847.1
ncRNA:24   UAAAGGGAAC-CUUUUUAUCUUUAG   1
  *|||=|=|||-||||||||||||||
targets:702   UUUUUCUUUGAGAAAAAUAGAAAUC   726

3.0 Zea mays full-length cDNA clone ZM_BFb0022M13 mRNA, complete cds NA coding protein psRNATarget
NM_001137974.1
ncRNA:24   UAAAGGGAAC-CUUUUUAUCUUUAG   1
  *|||=|=|||-||||||||||||||
targets:702   UUUUUCUUUGAGAAAAAUAGAAAUC   726

3.0 Zea mays 60S ribosomal protein L22-2 (LOC100192778), mRNA NA coding protein psRNATarget
XM_020553277.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||==|*||||||||||||||||
targets:2464   UUUUUUCGUGGAAAAAUAGAAAUC   2487

2.0 PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553278.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||==|*||||||||||||||||
targets:2453   UUUUUUCGUGGAAAAAUAGAAAUC   2476

2.0 PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X2, mRNA NA coding protein psRNATarget
BT054753.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||==|*||||||||||||||||
targets:2376   UUUUUUCGUGGAAAAAUAGAAAUC   2399

2.0 Zea mays full-length cDNA clone ZM_BFb0025A06 mRNA, complete cds NA coding protein psRNATarget
NM_001152676.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||==|*||||||||||||||||
targets:2376   UUUUUUCGUGGAAAAAUAGAAAUC   2399

2.0 Zea mays uncharacterized LOC100279717 (cl715_-2a), mRNA NA coding protein psRNATarget
EU942948.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  *|||==|*||||||||||||||||
targets:7   UUUUUUCGUGGAAAAAUAGAAAUC   30

2.0 Zea mays clone 1547322 mRNA sequence NA coding protein psRNATarget
XM_020546085.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||=||||*||||||||*|||||
targets:4474   AUUUUCCUUAGAAAAAUAAAAAUC   4497

2.5 PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008664818.2
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  ||||=||||*||||||||*|||||
targets:4455   AUUUUCCUUAGAAAAAUAAAAAUC   4478

2.5 PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA NA coding protein psRNATarget
BT069650.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  |*||===||*||||||||||||||
targets:87   AGUUUUUUUAGAAAAAUAGAAAUC   110

3.0 Zea mays full-length cDNA clone ZM_BFb0194N18 mRNA, complete cds NA coding protein psRNATarget
EU964244.1
ncRNA:24   UAAAGGGAACCUUUUUAUCUUUAG   1
  |*||===||*||||||||||||||
targets:49   AGUUUUUUUAGAAAAAUAGAAAUC   72

3.0 Zea mays clone 277280 glutathione S-transferase GSTF2 mRNA, complete cds NA coding protein psRNATarget
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