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BaseInfo

ncRNA ID	novel_zma_miR7441
Species	Zea mays
Class	miRNA
Genome position	Chr3:223487795-223487909 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	92 - GAUCCCCUUGUCACCAAAUCAACA - 115
Stem-loop(if miRNA)	--C            -CA        AA A                          UA    UGAUUUGGUGAC   GGGAUCAC  G GGAUUGGAGGGGAUUGAUGGGGAAAU  G    ||||||||||||   ||||||||  | ||||||||||||||||||||||||||    ACUAAACCACUG   CCCUAGUG  C CCUAACCUCCCCUAACUGCCCCUUUA  U ACA            UUC        CC A                          CU
Stem-loop sequence	CUGAUUUGGUGACCAGGGAUCACAAGAGGAUUGGAGGGGAUUGAUGGGGAAAUUAGUUCAUUUCCCCGUCAAUCCCCUCCAAUCCACCCGUGAUCCCCUUGUCACCAAAUCAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235485.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235405.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1400 from Patent EP2985353	NA	coding protein	psRNATarget
JB163736.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1400 from Patent EP2559767	NA	coding protein	psRNATarget
HI403275.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:5   GGUUGAUUUGGUGACAAGGGGAUC   28 Target Full Sequence	0.0	Sequence 1400 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||||||| targets:2085   GGUUGAUUUGGUGACAAGGGGAUC   2108 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|||||||||||||||||*||||| targets:1408   GGUUGAUUUGGUGACAAGUGGAUC   1431 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||*|||||| targets:1452   GGUUGAUUUGGUGACAAAGGGAUC   1475 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|||||||||||||||||*||||| targets:1434   GGUUGAUUUGGUGACAAGUGGAUC   1457 Target Full Sequence	1.5	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|||||||||||||||||*||||| targets:1434   GGUUGAUUUGGUGACAAGUGGAUC   1457 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||*|||| targets:1782   GGUUGAUUUGGUGACAAGGAGAUC   1805 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||||||||||||*|||| targets:2220   GGUUGAUUUGGUGACAAGGAGAUC   2243 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*|||||||||*||||||||||| targets:5   GGCUGAUUUGGUAACAAGGGGAUC   28 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*|||||||||*||||||||||| targets:5   GGCUGAUUUGGUAACAAGGGGAUC   28 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*|||||||||*||||||||||| targets:5   GGCUGAUUUGGUAACAAGGGGAUC   28 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163696.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
JB163863.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
HI403402.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
HI403235.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *|*||||||||||||||*|||||| targets:5   GGCUGAUUUGGUGACAAUGGGAUC   28 Target Full Sequence	1.5	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||*||||||||*||||| targets:485   GGUUGAUUUUGUGACAAGUGGAUC   508 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||*||||||||*||||| targets:513   GGUUGAUUUUGUGACAAGUGGAUC   536 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   *||||||||*||||||||*||||| targets:515   GGUUGAUUUUGUGACAAGUGGAUC   538 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***|||||||||||||||||*||| targets:5   GCCUGAUUUGGUGACAAGGGAAUC   28 Target Full Sequence	1.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***|||||||||||||||||*||| targets:5   GCCUGAUUUGGUGACAAGGGAAUC   28 Target Full Sequence	1.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***|||||||||||||||||*||| targets:5   GCCUGAUUUGGUGACAAGGGAAUC   28 Target Full Sequence	1.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
EU944341.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:444   CCCUGGUUUGAUGACAAGGGGAUA   467 Target Full Sequence	3.0	Zea mays clone 210925 mRNA sequence	NA	coding protein	psRNATarget
BT085264.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1579   CCCUGGUUUGAUGACAAGGGGAUA   1602 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0348F13 mRNA, complete cds	NA	coding protein	psRNATarget
EU956757.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1872   CCCUGGUUUGAUGACAAGGGGAUA   1895 Target Full Sequence	3.0	Zea mays clone 1572827 mandelonitrile lyase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645245.2	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1920   CCCUGGUUUGAUGACAAGGGGAUA   1943 Target Full Sequence	3.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054101.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1911   CCCUGGUUUGAUGACAAGGGGAUA   1934 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0099N22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645247.2	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1920   CCCUGGUUUGAUGACAAGGGGAUA   1943 Target Full Sequence	3.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645246.2	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1963   CCCUGGUUUGAUGACAAGGGGAUA   1986 Target Full Sequence	3.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645244.2	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1963   CCCUGGUUUGAUGACAAGGGGAUA   1986 Target Full Sequence	3.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054409.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1957   CCCUGGUUUGAUGACAAGGGGAUA   1980 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0040J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152531.1	ncRNA:24   ACAACUAAACCACUGUUCCCCUAG   1   ***||=||||*||||||||||||* targets:1957   CCCUGGUUUGAUGACAAGGGGAUA   1980 Target Full Sequence	3.0	Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), mRNA	NA	coding protein	psRNATarget