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BaseInfo

ncRNA ID osa-miRf10340-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UCAAUCCUGCGAUUCAAAGGGG - NA
Stem-loop(if miRNA)      C   A                  G          G   AA
GUUUU UCA UCCUGCGAUUCAAAGGGG CCUUAGGAUA GAA  A
||||| ||| |||||||||||||||||| |||||||||| |||
CAAAA AGU AGGAUGCUAAGUUUCCCC GGGAUUUUAU CUU  C
     A   A                  -          A   CC
Stem-loop sequence GUUUUCUCAAUCCUGCGAUUCAAAGGGGGCCUUAGGAUAGGAAAAACCCUUCAUAUUUUAGGGCCCCUUUGAAUCGUAGGAAUGAAAAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288347.1
ncRNA:22   GGGGAAACUUAGCGUCCUAACU   1
  |||||||||||||||*||||||
targets:2471   CCCCUUUGAAUCGCAAGAUUGA   2492

1.5 Oryza sativa Japonica Group cDNA, clone: J090023M08, full insert sequence NA coding protein psRNATarget
XM_015779631.1
ncRNA:22   GGGGAAACUUAGCGUCCUAACU   1
  *||*||||||||||||||||||
targets:35   GCCAUUUGAAUCGCAGGAUUGA   56

1.0 PREDICTED: Oryza sativa Japonica Group trinucleotide repeat-containing gene 18 protein-like (LOC107280680), mRNA trinucleotide repeat-containing gene 18 protein-like(LOC107280680) coding protein psRNATarget