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BaseInfo

ncRNA ID	novel_zma_miR7427
Species	Zea mays
Class	miRNA
Genome position	Chr10:35844873-35845000 [-]
Reference genome	RefGen_v4
Source	SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	105 - GACCUUGUUCGUUUGUGCCGGAUU - 128
Stem-loop(if miRNA)	--GA               C       GUG G      CG     UAACCGGAUU   U   U     A     CCUUGUUCGUUUGUG CGGAUUG   G UCGGAA  AUUCC          GCU GUC AAUUU U     ||||||||||||||| |||||||   | ||||||  |||||          ||| ||| ||||| A     GGAACAAGCAAACAC GCCUAAC   U GGCUUU  UAAGG          CGA UAG UUAAA U AUCC               A       --G G      AG     ---------U   U   U     A
Stem-loop sequence	GACCUUGUUCGUUUGUGCCGGAUUGGUGGGUCGGAACGAUUCCUAACCGGAUUGCUUGUCUAAUUUAUAUAAAAUUUGAUUAGCUGGAAUGAUUUCGGGUGCAAUCCGACACAAACGAACAAGGCCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008650936.2	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   |||=|||||||||||||||||||| targets:1794   AAUUCGGCACAAACGAACAAGGUC   1817 Target Full Sequence	0.0	PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:105   AAUCCGGCACAAACGAACAAGGCC   128 Target Full Sequence	1.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:105   AAUCCGGCACAAACGAACAAGGCC   128 Target Full Sequence	1.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:105   AAUCCGGCACAAACGAACAAGGCC   128 Target Full Sequence	1.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008657076.2	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   |||||||||||||=|||||||||* targets:2151   AAUCCGGCACAAAUGAACAAGGUA   2174 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (LOC103634611), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI407339.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:130   AAUCCGGCACAAACGAACAAGGCC   153 Target Full Sequence	1.5	Sequence 5464 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239469.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:130   AAUCCGGCACAAACGAACAAGGCC   153 Target Full Sequence	1.5	Sequence 5464 from Patent EP2985353	NA	coding protein	psRNATarget
JB167800.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:130   AAUCCGGCACAAACGAACAAGGCC   153 Target Full Sequence	1.5	Sequence 5464 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238001.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:23   AAUCCGGCACAAACGAACAAGGCC   46 Target Full Sequence	1.5	Sequence 3996 from Patent EP2985353	NA	coding protein	psRNATarget
HI405871.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:23   AAUCCGGCACAAACGAACAAGGCC   46 Target Full Sequence	1.5	Sequence 3996 from Patent EP2074227	NA	coding protein	psRNATarget
JB166332.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:23   AAUCCGGCACAAACGAACAAGGCC   46 Target Full Sequence	1.5	Sequence 3996 from Patent EP2559767	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:217   AAUCCGGCACAAACGAACAAGGCC   240 Target Full Sequence	1.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||*||||||||| targets:2516   AAUCCGGCACAAACAAACAAGGUC   2539 Target Full Sequence	1.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||||||||||||||||||*| targets:4515   AAUCCGGCACAAACGAACAAGGCC   4538 Target Full Sequence	1.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166387.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
HI405904.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
HI405926.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
JB166365.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:104   AAUCCGACACAAACGAACAAGGCC   127 Target Full Sequence	2.5	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238066.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:110   AAUCCGACACAAACGAACAAGGCC   133 Target Full Sequence	2.5	Sequence 4061 from Patent EP2985353	NA	coding protein	psRNATarget
HI405936.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:110   AAUCCGACACAAACGAACAAGGCC   133 Target Full Sequence	2.5	Sequence 4061 from Patent EP2074227	NA	coding protein	psRNATarget
JB166397.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:110   AAUCCGACACAAACGAACAAGGCC   133 Target Full Sequence	2.5	Sequence 4061 from Patent EP2559767	NA	coding protein	psRNATarget
JB166393.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4057 from Patent EP2559767	NA	coding protein	psRNATarget
HI405932.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4057 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238062.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4057 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238063.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4058 from Patent EP2985353	NA	coding protein	psRNATarget
JB166394.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4058 from Patent EP2559767	NA	coding protein	psRNATarget
HI405933.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:113   AAUCCGACACAAACGAACAAGGCC   136 Target Full Sequence	2.5	Sequence 4058 from Patent EP2074227	NA	coding protein	psRNATarget
HI407238.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:114   AAUCCGACACAAACGAACAAGGCC   137 Target Full Sequence	2.5	Sequence 5363 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239368.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:114   AAUCCGACACAAACGAACAAGGCC   137 Target Full Sequence	2.5	Sequence 5363 from Patent EP2985353	NA	coding protein	psRNATarget
JB167699.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:114   AAUCCGACACAAACGAACAAGGCC   137 Target Full Sequence	2.5	Sequence 5363 from Patent EP2559767	NA	coding protein	psRNATarget
EU942882.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:174   AAUCCGACACAAACGAACAAGGCC   197 Target Full Sequence	2.5	Zea mays clone 1543225 mRNA sequence	NA	coding protein	psRNATarget
EU971977.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:826   AAUCCGACACAAACGAACAAGGCC   849 Target Full Sequence	2.5	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973171.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:757   AAUCCGACACAAACGAACAAGGCC   780 Target Full Sequence	2.5	Zea mays clone 394490 mRNA sequence	NA	coding protein	psRNATarget
XM_008670105.2	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1116   AAUCCGACACAAACGAACAAGGCC   1139 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1521   AAUCCGACACAAACGAACAAGGCC   1544 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1521   AAUCCGACACAAACGAACAAGGCC   1544 Target Full Sequence	2.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
XM_020549216.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:241   AAUCCGACACAAACGAACAAGGCC   264 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1758   AAUCCGACACAAACGAACAAGGCC   1781 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1758   AAUCCGACACAAACGAACAAGGCC   1781 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1828   AAUCCGACACAAACGAACAAGGCC   1851 Target Full Sequence	2.5	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
EU973341.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:1828   AAUCCGACACAAACGAACAAGGCC   1851 Target Full Sequence	2.5	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:866   AAUCCGACACAAACGAACAAGGCC   889 Target Full Sequence	2.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538690.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*|||||||||||||||*| targets:4221   AAUCCGACACAAACGAACAAGGCC   4244 Target Full Sequence	2.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA	NA	coding protein	psRNATarget
JB166409.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   |=||||*|||||||||||||||*| targets:129   AGUCCGACACAAACGAACAAGGCC   152 Target Full Sequence	2.5	Sequence 4073 from Patent EP2559767	NA	coding protein	psRNATarget
HI405948.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   |=||||*|||||||||||||||*| targets:129   AGUCCGACACAAACGAACAAGGCC   152 Target Full Sequence	2.5	Sequence 4073 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238078.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   |=||||*|||||||||||||||*| targets:129   AGUCCGACACAAACGAACAAGGCC   152 Target Full Sequence	2.5	Sequence 4073 from Patent EP2985353	NA	coding protein	psRNATarget
EZ107386.1	ncRNA:24   UUAGGCCGUGUUUGCUUGUUCCAG   1   ||||||*=|*|||||||||||||| targets:72   AAUCCGAUAGAAACGAACAAGGUC   95 Target Full Sequence	3.0	TSA: Zea mays contig43044, mRNA sequence	NA	coding protein	psRNATarget