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BaseInfo

ncRNA ID novel_zma_miR7418
Species Zea mays
Class miRNA
Genome position Chr2:209775615-209775691 [-]
Reference genome RefGen_v4
Source SRR2647391
Length 24
Mature sequence(if miRNA) 1 - AUCCAUCUCAAUACAUAUGAAUUG - 24
Stem-loop(if miRNA) --     C             A   C        A   
  AUUCA AUGUGUUGAGGUG AUU AGAUGUAA UUAG
  ||||| ||||||||||||| ||| |||||||| |||U
  UAAGU UACAUAACUCUAC UAA UUUACAUU AAUU
GU     A             C   C        A   
Stem-loop sequence AUUCACAUGUGUUGAGGUGAAUUCAGAUGUAAAUUAGUUUAAAUUACAUUUCAAUCCAUCUCAAUACAUAUGAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT068947.2
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*=||||||=|||||||||||
targets:151   UAAUCUAUAUGUGUUGAGAUGGAU   174

2.5 Zea mays full-length cDNA clone ZM_BFb0013N24 mRNA, complete cds NA coding protein psRNATarget
JB163494.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*|||=|||||||||=|||||
targets:15   UAAUCCAUGUGUAUUGAGGUGGAU   38

2.5 Sequence 1158 from Patent EP2559767 NA coding protein psRNATarget
LQ235163.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*|||=|||||||||=|||||
targets:15   UAAUCCAUGUGUAUUGAGGUGGAU   38

2.5 Sequence 1158 from Patent EP2985353 NA coding protein psRNATarget
HI403033.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*|||=|||||||||=|||||
targets:15   UAAUCCAUGUGUAUUGAGGUGGAU   38

2.5 Sequence 1158 from Patent EP2074227 NA coding protein psRNATarget
JB163857.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

2.5 Sequence 1521 from Patent EP2559767 NA coding protein psRNATarget
LQ235526.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

2.5 Sequence 1521 from Patent EP2985353 NA coding protein psRNATarget
HI403396.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

2.5 Sequence 1521 from Patent EP2074227 NA coding protein psRNATarget
HI402937.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
JB163398.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
HI403051.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
JB163512.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
JB163411.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  ||||*||*||||||||||=|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI403123.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  *|||*||*||||||||||||||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.0 Sequence 1248 from Patent EP2074227 NA coding protein psRNATarget
JB163584.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  *|||*||*||||||||||||||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.0 Sequence 1248 from Patent EP2559767 NA coding protein psRNATarget
LQ235253.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  *|||*||*||||||||||||||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.0 Sequence 1248 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403486.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

2.5 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

2.5 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
JB163947.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  =|||*||*||||||||||=|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

2.5 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
EZ063549.1
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  *|||*||*||||||||||=|||||
targets:101   AAAUCCACAUGUAUUGAGGUGGAU   124

2.5 TSA: Zea mays contig64671, mRNA sequence NA coding protein psRNATarget
BT084723.2
ncRNA:24   GUUAAGUAUACAUAACUCUACCUA   1
  *|||*||*||||||||||||*|||
targets:99   AAAUCCACAUGUAUUGAGAUAGAU   122

2.5 Zea mays full-length cDNA clone ZM_BFb0166K06 mRNA, complete cds NA coding protein psRNATarget
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