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BaseInfo

ncRNA ID	novel_zma_miR7417
Species	Zea mays
Class	miRNA
Genome position	Chr2:211372604-211372813 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	25
Mature sequence(if miRNA)	186 - CUUAUGUAUAAAUGUGUGUUAUAUU - 210
Stem-loop(if miRNA)	--                                                CC         C   C          --------AAUCAAUA   U CUAAUGGUUGCA   CUUAUGUAUAAAUGUGUGUUAUAUUGUUAUGAGAAAAUGUUUCGGAAU  AUUGUGAUC UAC CAUAUAUAGA                UGU A            A   ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||                ||| |            U   GAAUACAUGUUUACACACAAUAUAACAAUACUCUUUUACAAAGUCUUA  UAACACUAG AUG GUAUAUAUUU                AUC G            G UU                                                AA         A   A          AAAACAAUAAAAUUAG   - UAAAGUGGUAAU
Stem-loop sequence	CUUAUGUAUAAAUGUGUGUUAUAUUGUUAUGAGAAAAUGUUUCGGAAUCCAUUGUGAUCCUACCCAUAUAUAGAAAUCAAUAUGUUACUAAUGGUUGCAAUGUAAUGGUGAAAUGCUAGAUUAAAAUAACAAAAUUUAUAUAUGAGUAAGAUCACAAUAAAUUCUGAAACAUUUUCUCAUAACAAUAUAACACACAUUUGUACAUAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545664.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||||||||||* targets:3041   AAUAUAACACACAUUUAUACAUAAU   3065 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103641885 (LOC103641885), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543297.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3813   AAUAUAACACACAUUUGUACAUAAA   3837 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020543292.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3800   AAUAUAACACACAUUUGUACAUAAA   3824 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543305.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3752   AAUAUAACACACAUUUGUACAUAAA   3776 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020543304.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3744   AAUAUAACACACAUUUGUACAUAAA   3768 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020543294.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3712   AAUAUAACACACAUUUGUACAUAAA   3736 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543299.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3709   AAUAUAACACACAUUUGUACAUAAA   3733 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020543300.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3695   AAUAUAACACACAUUUGUACAUAAA   3719 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020543295.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3685   AAUAUAACACACAUUUGUACAUAAA   3709 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543302.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3669   AAUAUAACACACAUUUGUACAUAAA   3693 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020543301.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3622   AAUAUAACACACAUUUGUACAUAAA   3646 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020543298.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3585   AAUAUAACACACAUUUGUACAUAAA   3609 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020543296.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3401   AAUAUAACACACAUUUGUACAUAAA   3425 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543293.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3388   AAUAUAACACACAUUUGUACAUAAA   3412 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543303.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||||||||||||=|||||||* targets:3340   AAUAUAACACACAUUUGUACAUAAA   3364 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X12, mRNA	NA	coding protein	psRNATarget
NM_001177118.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||===|||||||||||||||| targets:42   AAUAUAGUGCACAUUUAUACAUAAG   66 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384622 (LOC100384622), mRNA	NA	coding protein	psRNATarget
BT083780.2	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||||||===|||||||||||||||| targets:42   AAUAUAGUGCACAUUUAUACAUAAG   66 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0039F15 mRNA, complete cds	NA	coding protein	psRNATarget
EU974737.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   |=|||||||||=||||=|||||||| targets:702   AGUAUAACACAUAUUUGUACAUAAG   726 Target Full Sequence	2.5	Zea mays clone 457149 mRNA sequence	NA	coding protein	psRNATarget
XM_020541369.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   |=||||||||||||||=|||||||* targets:3372   AGUAUAACACACAUUUGUACAUAAA   3396 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633193 (LOC103633193), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546408.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   ||*||||=|||=||||||||||||| targets:1198   AACAUAAUACAUAUUUAUACAUAAG   1222 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636628 (LOC103636628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949408.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   |||||||||||||||||||||*||* targets:324   AAUAUAACACACAUUUAUACAAAAA   348 Target Full Sequence	2.5	Zea mays clone 406723 mRNA sequence	NA	coding protein	psRNATarget
EU950485.1	ncRNA:25   UUAUAUUGUGUGUAAAUAUGUAUUC   1   |||=*|||||||||||=|||||||* targets:614   AAUGAAACACACAUUUGUACAUAAA   638 Target Full Sequence	2.5	Zea mays clone 494097 mRNA sequence	NA	coding protein	psRNATarget