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BaseInfo

ncRNA ID	novel_zma_miR7416
Species	Zea mays
Class	miRNA
Genome position	Chr2:200406127-200406237 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	88 - GUCAUUCCGUUCUAGUUCCUUUGU - 111
Stem-loop(if miRNA)	-GAGC               C       --UCC  --UUGA         -G    A      GGGAUUGGAACGGAG GGCUCCG     GG      UUUUUUAGA  CGGA U      ||||||||||||||| |||||||     ||      |||||||||  |||| G      CCUUGAUCUUGCCUU CUGAGGU     CC      GAGGAGUCU  GCCU G UGUUU               A       UAAUC  UUAUAA         AG    U
Stem-loop sequence	GAGCGGGAUUGGAACGGAGCGGCUCCGUCCGGUUGAUUUUUUAGAGCGGAAUGGUUCCGGAUCUGAGGAGAAUAUUCCCUAAUUGGAGUCAUUCCGUUCUAGUUCCUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962750.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   ||||||*||||||||||*|||||| targets:1232   ACAAAGUAACUAGAACGUAAUGAC   1255 Target Full Sequence	2.5	Zea mays clone 245244 nudix type motif 22 mRNA, complete cds	NA	coding protein	psRNATarget
AY106474.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:741   UAGAAUGAAAUAGAACGGAAUGAC   764 Target Full Sequence	2.0	Zea mays PCO061185 mRNA sequence	NA	coding protein	psRNATarget
BT085955.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:2286   UAGAAUGAAAUAGAACGGAAUGAC   2309 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0090D11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159178.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:2319   UAGAAUGAAAUAGAACGGAAUGAC   2342 Target Full Sequence	2.0	Zea mays acylaminoacyl-peptidase 1 (aap1), mRNA	NA	coding protein	psRNATarget
EU976635.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:2319   UAGAAUGAAAUAGAACGGAAUGAC   2342 Target Full Sequence	2.0	Zea mays clone 985726 acyl-peptide hydrolase-like mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660524.2	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:2382   UAGAAUGAAAUAGAACGGAAUGAC   2405 Target Full Sequence	2.0	PREDICTED: Zea mays acylaminoacyl-peptidase 1 (aap1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063465.1	ncRNA:24   UGUUUCCUUGAUCUUGCCUUACUG   1   **=||*|||*|||||||||||||| targets:2387   UAGAAUGAAAUAGAACGGAAUGAC   2410 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0066C05 mRNA, complete cds	NA	coding protein	psRNATarget