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BaseInfo

ncRNA ID	novel_zma_miR7414
Species	Zea mays
Class	miRNA
Genome position	Chr1:81673257-81673483 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - AGAGCUAGUUUGGGAACCCCAUUU - 24
Stem-loop(if miRNA)	--  A                        C          C      C                      C   C        G     C   UA     C GG    -A   C   AG GCUAGUUUGGGAACCCCAUUUUUC AAAGGAUUUC AUUUUC CAAAAGAAAUUAGUUCAUUUUC CUU GGAAAAUG AAAUC CUU  GAAAA G  GUUC  GGG U   || |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||| |||||||| ||||| |||  ||||| |  ||||  |||   UC CGAUCAAACCCUUGGGGUAAAAAG UUUCCUAAAG UAAAAG GUUUUCUUUAAUCAAGUAAAAG GAA CUUUUUAU UUUAG GAA  UUUUU C  CAAG  UUU A AU  C                        A          A      A                      A   U        A     C   CC     A AU    AG   G
Stem-loop sequence	AGAGCUAGUUUGGGAACCCCAUUUUUCCAAAGGAUUUCCAUUUUCCCAAAAGAAAUUAGUUCAUUUUCCCUUCGGAAAAUGGAAAUCCCUUUAGAAAACGGGGUUCAGGGCUAGUUUGAGAACUACAUUUUUCCAAGCGAUUUAUAUUUUUCUAAGAGAAAAUGAACUAAUUUCUUUUGAGAAAAUAGAAAUCCUUUAGAAAAAUGGGGUUCCCAAACUAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547541.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||||||||||||||||||*|| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||||||=||||||||||*|| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	2.5	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
EU956282.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|||||||||||||||=||| targets:387   AAAUUGGGUUCCCAAACUAGUUCU   410 Target Full Sequence	1.5	Zea mays clone 1560133 ras-related protein RHN1 mRNA, complete cds	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||||||||||||||||||*|* targets:5579   AAAUGGGGUUCCCAAACUAGCCCG   5602 Target Full Sequence	2.5	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
HI406821.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||*|||||||||||||||*|| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238951.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||*|||||||||||||||*|| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2985353	NA	coding protein	psRNATarget
JB167282.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||*|||||||||||||||*|| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2559767	NA	coding protein	psRNATarget
EU947743.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||||||*||||||||||*|| targets:118   AAAUGGGGUUGCCAAACUAGCACU   141 Target Full Sequence	2.5	Zea mays clone 356079 mRNA sequence	NA	coding protein	psRNATarget
EU949735.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||||||*||||||||||*|| targets:169   AAAUGGGGUUGCCAAACUAGCACU   192 Target Full Sequence	2.5	Zea mays clone 442739 mRNA sequence	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	2.5	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
BT063756.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   |||||**||||||||||||||||| targets:1683   AAAUGUUGUUCCCAAACUAGCUCU   1706 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0104A15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||||||*||||||||||*|| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	2.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||||*||||||||||||||*|| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UUUA-CCCCAAGGGUUUGAUCGAGA   1   ||||-|||||||||||||||||*|* targets:1778   AAAUUGGGGUUCCCAAACUAGCCCK   1802 Target Full Sequence	2.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|||||=||||||||||*|| targets:1306   AAAUAGGGUUUCCAAACUAGCCCU   1329 Target Full Sequence	2.5	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
XM_008680397.2	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|||||*|||||=||||||| targets:1691   AAAUAGGGUUGCCAAAUUAGCUCU   1714 Target Full Sequence	2.5	PREDICTED: Zea mays exocyst complex component EXO70A1 (LOC103653505), mRNA	NA	coding protein	psRNATarget
BT084259.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|*||||||||||||||*|| targets:1009   AAAUUGAGUUCCCAAACUAGCCCU   1032 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967093.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|*||||||||||||||*|| targets:1005   AAAUUGAGUUCCCAAACUAGCCCU   1028 Target Full Sequence	2.5	Zea mays clone 299427 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150806.2	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||||*|*||||||||||||||*|| targets:1055   AAAUUGAGUUCCCAAACUAGCCCU   1078 Target Full Sequence	2.5	Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA	NA	coding protein	psRNATarget
AY110586.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ***||||||||||||||||||*|* targets:5582   NNNUGGGGUUCCCAAACUAGCCCG   5605 Target Full Sequence	2.5	Zea mays CL1800_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020550081.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   ||*|*|*|||=||||||||||||| targets:2430   AAUUUGAGUUUCCAAACUAGCUCU   2453 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109944788 (LOC109944788), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   *|*||*|||||||||||||||*|| targets:3522   UAUUGUGGUUCCCAAACUAGCCCU   3545 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCGAGA   1   *|*||*|||||||||||||||*|| targets:3557   UAUUGUGGUUCCCAAACUAGCCCU   3580 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget