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BaseInfo

ncRNA ID	novel_zma_miR7393
Species	Zea mays
Class	miRNA
Genome position	Chr9:86984766-86984879 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	91 - CUCUCCGGUUUUGUGGCUCCCAAA - 114
Stem-loop(if miRNA)	--     AU -    U                         A       CA      A   UGGGA  C CAAA ACUGGAGGGGAUUGGAGGGGCUAAA UCCCCUC  UAUUCA U   |||||  | |||| ||||||||||||||||||||||||| |||||||  ||||||   ACCCU  G GUUU UGGCCUCUCCUAACCUCCCUGAUUU AGGGGAG  AUAAGU U AA     CG U    -                         A       AG      U
Stem-loop sequence	UGGGAAUCCAAAUACUGGAGGGGAUUGGAGGGGCUAAAAUCCCCUCCAUAUUCAAUUUUGAAUAGAGAGGGGAAUUUAGUCCCUCCAAUCCUCUCCGGUUUUGUGGCUCCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163454.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||=||||||||=|||||| targets:9   UUUGGGAGUCACAAAACUGGAGAG   32 Target Full Sequence	2.5	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
HI402993.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||=||||||||=|||||| targets:9   UUUGGGAGUCACAAAACUGGAGAG   32 Target Full Sequence	2.5	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||=||||||||=|||||| targets:9   UUUGGGAGUCACAAAACUGGAGAG   32 Target Full Sequence	2.5	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
EU973182.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||||||||||||||||*| targets:1205   UUUGGGAGCCACAAAACCGGAGUG   1228 Target Full Sequence	1.5	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151652.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||||||||||||||||*| targets:1205   UUUGGGAGCCACAAAACCGGAGUG   1228 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||||||=||||||*|||||||| targets:1597   UUUGGGAGUCACAAACCCGGAGAG   1620 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   |||||||||||*|||||||||||* targets:140   UUUGGGAGCCAGAAAACCGGAGAA   163 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
X70154.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||*||||=||||||||||||=| targets:192   UUUGAGAGCUACAAAACCGGAGGG   215 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152)	NA	coding protein	psRNATarget
X54212.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||*||||=||||||||||||=| targets:1014   UUUGAGAGCUACAAAACCGGAGGG   1037 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120)	NA	coding protein	psRNATarget
NM_001111958.1	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||*||||=||||||||||||=| targets:1014   UUUGAGAGCUACAAAACCGGAGGG   1037 Target Full Sequence	2.5	Zea mays protein b-32 (O6), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   |||||*||||||||||||||*||| targets:1084   UUUGGAAGCCACAAAACCGGUGAG   1107 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008662350.2	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   ||||**||||||||||||||||=| targets:5207   UUUGAAAGCCACAAAACCGGAGGG   5230 Target Full Sequence	2.5	PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676930.2	ncRNA:24   AAACCCUCGGUGUUUUGGCCUCUC   1   |*|*||||*|||||||=||||||| targets:2402   UCUAGGAGACACAAAAUCGGAGAG   2425 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103651308), mRNA	NA	coding protein	psRNATarget