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BaseInfo

ncRNA ID novel_zma_miR7392
Species Zea mays
Class miRNA
Genome position Chr9:31743662-31743893 [+]
Reference genome RefGen_v4
Source SRR2647391
Length 24
Mature sequence(if miRNA) 209 - UUUCCACUGGCGGUUUCUUAAGCC - 232
Stem-loop(if miRNA) -C     -                                                                                  AA  UAAGA                U
  UUUAA AAAUCGCCAGUGGAAACCUAUUUCCACUGGCGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUU  GU     UAACCGCCAGUGGAAA A
  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     ||||||||||||||||
  GAAUU UUUGGCGGUCACCUUUGGAUAAAGGUGACCGCCAAUAGAAUUGUGUUGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAA  CA     GUUGGCGGUCACCUUU G
CC     C                                                                                  CA  UUGUG                G
Stem-loop sequence CUUUAAAAAUCGCCAGUGGAAACCUAUUUCCACUGGCGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUAAGUUAAGAUAACCGCCAGUGGAAAUAGGUUUCCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUGUGUUAAGAUAACCGCCAGUGGAAAUAGGUUUCCACUGGCGGUUUCUUAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU960305.1
ncRNA:24   CCGAAUUCUUUGGCGGUCACCUUU   1
  |*|*|||*||||||||||||*|||
targets:698   GACGUAAUAAACCGCCAGUGCAAA   721

2.5 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150001.1
ncRNA:24   CCGAAUUCUUUGGCGGUCACCUUU   1
  |*|*|||*||||||||||||*|||
targets:698   GACGUAAUAAACCGCCAGUGCAAA   721

2.5 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget