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BaseInfo

ncRNA ID	novel_zma_miR7388
Species	Zea mays
Class	miRNA
Genome position	Chr9:49572354-49572441 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	65 - ACGGUCUCCAAAAUAUAGCUUUGA - 88
Stem-loop(if miRNA)	--       --    AAU    -     --ACCAAU    U     UA   ACGGUCU  CCAA   AUAG CUUUG        GUUU UUUGU  A   |||||||  ||||   |||| |||||        |||| |||||   UGUCAGG  GGUU   UGUC GGGAC        CAAG AAAUA  A GG       UU    ---    U     AUAAUUCU    U     UA
Stem-loop sequence	ACGGUCUCCAAAAUAUAGCUUUGACCAAUGUUUUUUUGUUAAAAUAUAAAUGAACUCUUAAUACAGGGUCUGUUUGGUUGGACUGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054396.1	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||||| targets:2075   UCAAAGUUAUAUUUUGGAGACCGU   2098 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||||| targets:3230   UCAAAGUUAUAUUUUGGAGACCGU   3253 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||||| targets:3274   UCAAAGUUAUAUUUUGGAGACCGU   3297 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||||| targets:3484   UCAAAGUUAUAUUUUGGAGACCGU   3507 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||||| targets:3520   UCAAAGUUAUAUUUUGGAGACCGU   3543 Target Full Sequence	1.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949925.1	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   ||||||=||||||||||||||=|| targets:702   UCAAAGUUAUAUUUUGGAGACUGU   725 Target Full Sequence	2.5	Zea mays clone 453131 mRNA sequence	NA	coding protein	psRNATarget
XM_008680620.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   |||||||*|||||*|||||||||| targets:1424   UCAAAGCCAUAUUCUGGAGACCGU   1447 Target Full Sequence	2.5	PREDICTED: Zea mays cell division protein FtsZ homolog 1, chloroplastic-like (LOC103653816), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008680618.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   |||||||*|||||*|||||||||| targets:2217   UCAAAGCCAUAUUCUGGAGACCGU   2240 Target Full Sequence	2.5	PREDICTED: Zea mays cell division protein FtsZ homolog 1, chloroplastic-like (LOC103653816), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008680616.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   |||||||*|||||*|||||||||| targets:2244   UCAAAGCCAUAUUCUGGAGACCGU   2267 Target Full Sequence	2.5	PREDICTED: Zea mays cell division protein FtsZ homolog 1, chloroplastic-like (LOC103653816), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008680615.2	ncRNA:24   AGUUUCGAUAUAAAACCUCUGGCA   1   |||||||*|||||*|||||||||| targets:2259   UCAAAGCCAUAUUCUGGAGACCGU   2282 Target Full Sequence	2.5	PREDICTED: Zea mays cell division protein FtsZ homolog 1, chloroplastic-like (LOC103653816), transcript variant X1, mRNA	NA	coding protein	psRNATarget