Search result

BaseInfo

ncRNA ID novel_zma_miR7382
Species Zea mays
Class miRNA
Genome position Chr8:99109546-99109758 [+]
Reference genome RefGen_v4
Source SRR2647391
Length 23
Mature sequence(if miRNA) 1 - CCCUAUCUAAUAGUUCAACUAUU - 23
Stem-loop(if miRNA) --     U                           A                       U    C A    C       UUUC   AAUAAUUUUUAGCCAACUAA
  CCCUA CUAAUAGUUCAACUAUUAGCUAUUUUU GUAAAUUAGUUAAUAGUUAGGUA UUAU U UUAG UAGCUAA    ACU                    C
  ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||| |||||||    |||                    U
  GGGAU GAUUAUCAAGUUGAUAAUCGAUAAAAA CAUUUAAUCAAUUAUCAAUCCAU GAUA A AAUC AUCGAUU    CAC                    A
GC     C                           C                       C    A C    A       CCCC   AAACUUACGUGAUUUUGAUU
Stem-loop sequence CCCUAUCUAAUAGUUCAACUAUUAGCUAUUUUUAGUAAAUUAGUUAAUAGUUAGGUAUUUAUCUAUUAGCUAGCUAAUUUCACUAAUAAUUUUUAGCCAACUAACUAUUAGUUUUAGUGCAUUCAAACACCCCCUUAGCUAACUAACAAAUAGCUACCUAACUAUUAACUAAUUUACCAAAAAUAGCUAAUAGUUGAACUAUUAGCUAGGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064473.2
ncRNA:23   UUAUCAACUUGAUAAUCUAUCCC   1
  |||||||||||||||||||||**
targets:204   AAUAGUUGAACUAUUAGAUAGAC   226

2.5 Zea mays full-length cDNA clone ZM_BFc0172E03 mRNA, complete cds NA coding protein psRNATarget
AY110074.1
ncRNA:23   UUAUCAACUUGAUAAUCUAUCCC   1
  |||||||||||||||||||||**
targets:223   AAUAGUUGAACUAUUAGAUAGAC   245

2.5 Zea mays CL11184_1 mRNA sequence NA coding protein psRNATarget
EU953408.1
ncRNA:23   UUAUCAACUUGAUAAUCUAUCCC   1
  |||||*|||||||||||*|||||
targets:1392   AAUAGCUGAACUAUUAGCUAGGG   1414

2.5 Zea mays clone 1408713 mRNA sequence NA coding protein psRNATarget