Search result

BaseInfo

ncRNA ID	novel_zma_miR7378
Species	Zea mays
Class	miRNA
Genome position	Chr1:232632855-232632947 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	22
Mature sequence(if miRNA)	1 - CACAGAUCUUGGCGCCGAGCUU - 22
Stem-loop(if miRNA)	--      -             ----------C        AU     A CAC  AGAUCU UGGCGCCGAGCUU           GUGCCGCG  GGCUC A |||  |||||| |||||||||||||           ||||||||  ||||| GUG  UCUAGA ACCGUGGCUCGAG           UACGGUGC  UCGGG A    CU      U             CUCGGUGUAAC        GG     A
Stem-loop sequence	CACAGAUCUUGGCGCCGAGCUUCGUGCCGCGAUGGCUCAAAAGGGCUGGCGUGGCAUCAAUGUGGCUCGAGCUCGGUGCCAUAGAUCUUCGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672912.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *||||||||||||||||||||| targets:369   UAGCUCGGCGCCAAGAUCUGUG   390 Target Full Sequence	0.0	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *||||||||||||||||||||| targets:402   UAGCUCGGCGCCAAGAUCUGUG   423 Target Full Sequence	0.0	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   =||||||||||||||||||*|| targets:1837   GAGCUCGGCGCCAAGAUCUAUG   1858 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   =||||||||||||||||||*|| targets:1862   GAGCUCGGCGCCAAGAUCUAUG   1883 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   =||||||||||||||||||*|| targets:1869   GAGCUCGGCGCCAAGAUCUAUG   1890 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405982.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *||||||||||||||||||*|| targets:145   UAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *||||||||||||||||||*|| targets:145   UAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *||||||||||||||||||*|| targets:145   UAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
HI405915.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
JB166376.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:13   UACCUCGGCGCCAAGAUCUAUG   34 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:58   UACCUCGGCGCCAAGAUCUAUG   79 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:35   UACCUCGGCGCCAAGAUCUAUG   56 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:215   UACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:215   UACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:215   UACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:219   UACCUCGGCGCCAAGAUCUAUG   240 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:219   UACCUCGGCGCCAAGAUCUAUG   240 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:284   UACCUCGGCGCCAAGAUCUAUG   305 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   *|*||||||||||||||||*|| targets:991   UACCUCGGCGCCAAGAUCUAUG   1012 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:22   UUCGAGCCGCGGUUCUAGACAC   1   ==|*|||||||||||||||*|| targets:349   GGGGUCGGCGCCAAGAUCUAUG   370 Target Full Sequence	2.5	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget