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BaseInfo

ncRNA ID	novel_zma_miR7374
Species	Zea mays
Class	miRNA
Genome position	Chr8:119340297-119340418 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - CUACGUGACUCUCAUCUAAACACU - 24
Stem-loop(if miRNA)	--       UU    -    AA    GAUGA       GC     ----------------   CCA        UGUUUGG  UGAG GUCA  GUAG     GGCGGGG  GACAC                CGU   CUCGAU   |||||||  |||| ||||  ||||     |||||||  |||||                |||   |||||U   ACAAAUC  ACUC CAGU  CAUC     CCGCUCC  UUGUG                GCA   GAGUUU UC       -U    U    -G    ----A       AU     AUCAAAAACCACCACC   CUA
Stem-loop sequence	UGUUUGGUUUGAGGUCAAAGUAGGAUGAGGCGGGGGCGACACCGUCCACUCGAUUUUUGAGAUCACGCCACCACCAAAAACUAGUGUUUACCUCGCCACUACGUGACUCUCAUCUAAACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067160.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||||||||||||||||||* targets:1669   AGUGUUUAGAUGAGAGUCACGUAA   1692 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0216C18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157516.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||||||||||||||||||* targets:1669   AGUGUUUAGAUGAGAGUCACGUAA   1692 Target Full Sequence	1.0	Zea mays VAMP-like protein YKT62 (LOC100284621), mRNA	NA	coding protein	psRNATarget
EZ099513.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||=||||||||||=||||| targets:53   AGUGUUUGGAUGAGAGUCGCGUAG   76 Target Full Sequence	2.5	TSA: Zea mays contig35168, mRNA sequence	NA	coding protein	psRNATarget
EU946586.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||=||||||||||=||||| targets:478   AGUGUUUGGAUGAGAGUCGCGUAG   501 Target Full Sequence	2.5	Zea mays clone 317847 mRNA sequence	NA	coding protein	psRNATarget
BT018563.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||=||||||||||=||||| targets:1630   AGUGUUUGGAUGAGAGUCGCGUAG   1653 Target Full Sequence	2.5	Zea mays clone EL01N0441D08.d mRNA sequence	NA	coding protein	psRNATarget
EU951106.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   *||||||=|||||||||||||||| targets:189   CGUGUUUGGAUGAGAGUCACGUAG   212 Target Full Sequence	1.0	Zea mays clone 687907 mRNA sequence	NA	coding protein	psRNATarget
XM_008654591.2	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   |||||||*||||||||||||*||| targets:855   AGUGUUUCGAUGAGAGUCACAUAG   878 Target Full Sequence	2.5	PREDICTED: Zea mays purine permease 2 (LOC103632875), mRNA	NA	coding protein	psRNATarget
XM_020541979.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   =*||||||||||||||||||*||| targets:2077   GAUGUUUAGAUGAGAGUCACAUAG   2100 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100274616), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541980.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   =*||||||||||||||||||*||| targets:2088   GAUGUUUAGAUGAGAGUCACAUAG   2111 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100274616), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ080782.1	ncRNA:24   UCACAAAUCUACUCUCAGUGCAUC   1   ||||*|||*|||=||||||||||| targets:65   AGUGAUUAAAUGGGAGUCACGUAG   88 Target Full Sequence	2.5	TSA: Zea mays contig16421, mRNA sequence	NA	coding protein	psRNATarget