Search result

BaseInfo

ncRNA ID novel_zma_miR7370
Species Zea mays
Class miRNA
Genome position Chr8:138464564-138464630 [-]
Reference genome RefGen_v4
Source SRR2647391
Length 24
Mature sequence(if miRNA) 1 - UCCGUAUUUAGCAAUUUAGAGACU - 24
Stem-loop(if miRNA) --          A C                  
  UCUCUAGAUU C AAAUGCGGAAACUAAAAUA
  |||||||||| | ||||||||||||||||||G
  AGAGAUUUAA G UUUAUGCCUUUGAUUUUGA
UC          C A                  
Stem-loop sequence UCUCUAGAUUACCAAAUGCGGAAACUAAAAUAGAGUUUUAGUUUCCGUAUUUAGCAAUUUAGAGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546127.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||||||||||||||||||||||
targets:1444   AGUCUCUAAAUUGCUAAAUACGGA   1467

0.0 PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||||||||||||||||||=|||
targets:611   AGUCUCUAAAUUGCUAAAUAUGGA   634

1.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
JB167393.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||*|||||||||||||||||||
targets:32   AGUCCCUAAAUUGCUAAAUACGGA   55

0.0 Sequence 5057 from Patent EP2559767 NA coding protein psRNATarget
HI406932.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||*|||||||||||||||||||
targets:32   AGUCCCUAAAUUGCUAAAUACGGA   55

0.0 Sequence 5057 from Patent EP2074227 NA coding protein psRNATarget
LQ239062.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||*|||||||||||||||||||
targets:32   AGUCCCUAAAUUGCUAAAUACGGA   55

0.0 Sequence 5057 from Patent EP2985353 NA coding protein psRNATarget
HI407135.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||||||||||*|||||||||||
targets:6   AGUCUCUAAAUUACUAAAUACGGA   29

1.5 Sequence 5260 from Patent EP2074227 NA coding protein psRNATarget
LQ239265.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||||||||||*|||||||||||
targets:6   AGUCUCUAAAUUACUAAAUACGGA   29

1.5 Sequence 5260 from Patent EP2985353 NA coding protein psRNATarget
JB167596.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  ||||||||||||*|||||||||||
targets:6   AGUCUCUAAAUUACUAAAUACGGA   29

1.5 Sequence 5260 from Patent EP2559767 NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |||=*||||||||=||||||||||
targets:506   AGUUCCUAAAUUGUUAAAUACGGA   529

1.5 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |||=*|||||||||||||||=|||
targets:1532   AGUUCCUAAAUUGCUAAAUAUGGA   1555

1.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
AY104678.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |||=*|||||||||||||||=|||
targets:1521   AGUUCCUAAAUUGCUAAAUAUGGA   1544

1.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
NM_001174508.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |*|||*|||||||||||||=||||
targets:2321   AAUCUAUAAAUUGCUAAAUGCGGA   2344

2.5 Zea mays hypothetical protein (LOC100381696), mRNA NA coding protein psRNATarget
BT062019.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |*|||*|||||||||||||=||||
targets:2321   AAUCUAUAAAUUGCUAAAUGCGGA   2344

2.5 Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds NA coding protein psRNATarget
XM_008674864.2
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |*|||*|||||||||||||=||||
targets:2262   AAUCUAUAAAUUGCUAAAUGCGGA   2285

2.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549827.1
ncRNA:24   UCAGAGAUUUAACGAUUUAUGCCU   1
  |*|||*|||||||||||||=||||
targets:1887   AAUCUAUAAAUUGCUAAAUGCGGA   1910

2.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.