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BaseInfo

ncRNA ID	novel_zma_miR7363
Species	Zea mays
Class	miRNA
Genome position	Chr1:219655303-219655402 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	77 - ACACUCCAAUCCACAUGGAAUUGG - 100
Stem-loop(if miRNA)	--UAA             -    G       UC  U   AAUCUAUAGCAA      UCCAUGUGGAUUG AGUG UAUUGGG  GG UUA            G      ||||||||||||| |||| |||||||  || |||      AGGUACACCUAAC UCAC AUAAUCU  CC AAU            U GGUUA             C    -       UA  U   CCUACAUAAAAC
Stem-loop sequence	UAAUCCAUGUGGAUUGAGUGGUAUUGGGUCGGUUUAAAUCUAUAGCAAGUCAAAAUACAUCCUAAUCCAUUCUAAUACACUCCAAUCCACAUGGAAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239247.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |||||||||||||||||||||||| targets:6   CCAAUUCCAUGUGGAUUGGAGUGU   29 Target Full Sequence	0.0	Sequence 5242 from Patent EP2985353	NA	coding protein	psRNATarget
HI407117.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |||||||||||||||||||||||| targets:6   CCAAUUCCAUGUGGAUUGGAGUGU   29 Target Full Sequence	0.0	Sequence 5242 from Patent EP2074227	NA	coding protein	psRNATarget
JB167578.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |||||||||||||||||||||||| targets:6   CCAAUUCCAUGUGGAUUGGAGUGU   29 Target Full Sequence	0.0	Sequence 5242 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152495.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =||||||=|||||||||||||||| targets:1059   UCAAUUCUAUGUGGAUUGGAGUGU   1082 Target Full Sequence	1.0	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
BT054344.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =||||||=|||||||||||||||| targets:1059   UCAAUUCUAUGUGGAUUGGAGUGU   1082 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
AY104840.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =||||||=|||||||||||||||| targets:1253   UCAAUUCUAUGUGGAUUGGAGUGU   1276 Target Full Sequence	1.0	Zea mays PCO100726 mRNA sequence	NA	coding protein	psRNATarget
LQ238013.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:5   CCAAUUCCAUGUGGAUUGAAGUGU   28 Target Full Sequence	1.5	Sequence 4008 from Patent EP2985353	NA	coding protein	psRNATarget
HI405883.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:5   CCAAUUCCAUGUGGAUUGAAGUGU   28 Target Full Sequence	1.5	Sequence 4008 from Patent EP2074227	NA	coding protein	psRNATarget
JB166344.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:5   CCAAUUCCAUGUGGAUUGAAGUGU   28 Target Full Sequence	1.5	Sequence 4008 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ==||||=||||||||||||||||| targets:86   UUAAUUUCAUGUGGAUUGGAGUGU   109 Target Full Sequence	1.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
JB167414.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ==||||=||||||||||||||||| targets:86   UUAAUUUCAUGUGGAUUGGAGUGU   109 Target Full Sequence	1.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ==||||=||||||||||||||||| targets:86   UUAAUUUCAUGUGGAUUGGAGUGU   109 Target Full Sequence	1.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
BT066125.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:1012   CCAAUUCCAUGUGGAUUGAAGUGU   1035 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
BT042439.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:903   CCAAUUCCAUGUGGAUUGAAGUGU   926 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
EU952677.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:925   CCAAUUCCAUGUGGAUUGAAGUGU   948 Target Full Sequence	1.5	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
AY106055.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:921   CCAAUUCCAUGUGGAUUGAAGUGU   944 Target Full Sequence	1.5	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:925   CCAAUUCCAUGUGGAUUGAAGUGU   948 Target Full Sequence	1.5	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU976164.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:925   CCAAUUCCAUGUGGAUUGAAGUGU   948 Target Full Sequence	1.5	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008654742.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:1744   CCAAUUCCAUGUGGAUUGAAGUGU   1767 Target Full Sequence	1.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654741.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||||||||||||||||||*||||| targets:1808   CCAAUUCCAUGUGGAUUGAAGUGU   1831 Target Full Sequence	1.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |=|||||||||||||||*|||||| targets:1051   CUAAUUCCAUGUGGAUUAGAGUGU   1074 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||||||||||||||||||*| targets:889   UCAAUUCCAUGUGGAUUGGAGUAU   912 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||||||||||||||||||*| targets:889   UCAAUUCCAUGUGGAUUGGAGUAU   912 Target Full Sequence	1.5	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||||||||||||||||||*| targets:941   UCAAUUCCAUGUGGAUUGGAGUAU   964 Target Full Sequence	1.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||||||||||||||||||*| targets:970   UCAAUUCCAUGUGGAUUGGAGUAU   993 Target Full Sequence	1.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150601.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =||||||=|||||||||*|||||| targets:682   UCAAUUCUAUGUGGAUUAGAGUGU   705 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276902 (LOC100276902), mRNA	NA	coding protein	psRNATarget
EU965626.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =||||||=|||||||||*|||||| targets:682   UCAAUUCUAUGUGGAUUAGAGUGU   705 Target Full Sequence	2.5	Zea mays clone 287521 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350737.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||=||||||||||||*|||| targets:3981   UCAAUUUCAUGUGGAUUGGUGUGU   4004 Target Full Sequence	2.5	Zea mays phospholipase D family protein (LOC100272416), mRNA	NA	coding protein	psRNATarget
XM_008654744.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |||||||||**||||||||||||| targets:2086   CCAAUUCCACAUGGAUUGGAGUGU   2109 Target Full Sequence	2.0	PREDICTED: Zea mays GTPase-activating protein gyp7 (LOC103633061), mRNA	NA	coding protein	psRNATarget
BT043046.1	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |=||*|||||||||||||||-|||| targets:1026   CUAAAUCCAUGUGGAUUGGAUGUGU   1050 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0087D17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148796.1	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |=||*|||||||||||||||-|||| targets:1026   CUAAAUCCAUGUGGAUUGGAUGUGU   1050 Target Full Sequence	3.0	Zea mays uncharacterized LOC100274437 (pco129366(222)), mRNA	NA	coding protein	psRNATarget
AY104584.1	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |=||*|||||||||||||||-|||| targets:1062   CUAAAUCCAUGUGGAUUGGAUGUGU   1086 Target Full Sequence	3.0	Zea mays PCO129366 mRNA sequence	NA	coding protein	psRNATarget
EU946804.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   =|||||*||||||||||||*|||| targets:558   UCAAUUACAUGUGGAUUGGUGUGU   581 Target Full Sequence	2.5	Zea mays clone 323768 mRNA sequence	NA	coding protein	psRNATarget
AY103558.2	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |=*|||||||*||||||||||||| targets:1550   CUUAUUCCAUAUGGAUUGGAGUGU   1573 Target Full Sequence	1.0	Zea mays PCO134114 mRNA sequence	NA	coding protein	psRNATarget
XM_008669573.2	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |||--|||||||||||||||-|||| targets:1419   CCA--UCCAUGUGGAUUGGAUGUGU   1441 Target Full Sequence	3.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |||--|||||||||||||||-|||| targets:1402   CCA--UCCAUGUGGAUUGGAUGUGU   1424 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   GGUUAAGGUACACCUAACCU-CACA   1   |||--|||||||||||||||-|||| targets:1402   CCA--UCCAUGUGGAUUGGAUGUGU   1424 Target Full Sequence	3.0	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
EU946469.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   ||=-||=||||||||||||||*|| targets:706   CCG-UUUCAUGUGGAUUGGAGGGU   728 Target Full Sequence	2.5	Zea mays clone 313172 mRNA sequence	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |=*|||||||*|*||||||||||| targets:82   CUCAUUCCAUAUUGAUUGGAGUGU   105 Target Full Sequence	2.5	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |=*|||||||*|*||||||||||| targets:82   CUCAUUCCAUAUUGAUUGGAGUGU   105 Target Full Sequence	2.5	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   GGUUAAGGUACACCUAACCUCACA   1   |=*|||||||*|*||||||||||| targets:82   CUCAUUCCAUAUUGAUUGGAGUGU   105 Target Full Sequence	2.5	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
EU951778.1	ncRNA:24   GGU-----UAAGGUACACCUAACCUCACA   1   |=|-----|||*||||||*|||||||||| targets:372   CUAUUGAUAUUACAUGUGUAUUGGAGUGU   400 Target Full Sequence	2.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget