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BaseInfo

ncRNA ID	novel_zma_miR7351
Species	Zea mays
Class	miRNA
Genome position	Chr7:164827286-164827407 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	99 - AGGUCUAGUUUGGGAACCCCAUUU - 122
Stem-loop(if miRNA)	--   U         G    CC     CC  -         UAU              UUAG   AGG CUAGUUUGG AACC  AUUUU  CA GGGGUUUUU   UUUCCUAAGGAAAA    U   ||| ||||||||| ||||  |||||  || |||||||||   ||||||||||||||   UCC GAUCAAACC UUGG  UAAAA  GU CCCUAAAGG   AAAGGGUUCCUUUU    U AA   C         G    AU     AA  A         -UU              UUAC
Stem-loop sequence	AGGUCUAGUUUGGGAACCCCAUUUUCCCAGGGGUUUUUUAUUUUCCUAAGGAAAAUUAGUUCAUUUUUUCCUUGGGAAAUUGGAAAUCCCAUGAAAAAAUUAGGUUGCCAAACUAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547541.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||||||||||||||||*||| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||||||=|||||||||*||| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	2.5	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||||||||||||||||*||* targets:5579   AAAUGGGGUUCCCAAACUAGCCCG   5602 Target Full Sequence	2.5	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
JB167282.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   |||||*||||||||||||||*||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2559767	NA	coding protein	psRNATarget
HI406821.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   |||||*||||||||||||||*||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238951.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   |||||*||||||||||||||*||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	2.5	Sequence 4946 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548086.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|||||*||||||||||||| targets:1324   AAAUAGGGUUGCCAAACUAGACCU   1347 Target Full Sequence	1.0	PREDICTED: Zea mays protein PELOTA 1 (LOC103645815), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	2.5	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
NM_001351109.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|||||*||||||||||||| targets:1580   AAAUAGGGUUGCCAAACUAGACCU   1603 Target Full Sequence	1.0	Zea mays protein PELOTA 1 (LOC103645815), mRNA	NA	coding protein	psRNATarget
NM_001176059.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:1246   AAAUGGAGUUCCCAAACUAGUCCU   1269 Target Full Sequence	2.5	Zea mays putative coatomer beta subunit family protein (LOC100383405), mRNA	NA	coding protein	psRNATarget
BT067132.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:1246   AAAUGGAGUUCCCAAACUAGUCCU   1269 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0204M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||||||*|||||||||*||| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	2.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_008660641.2	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:3185   AAAUGGAGUUCCCAAACUAGUCCU   3208 Target Full Sequence	2.5	PREDICTED: Zea mays putative coatomer beta subunit family protein (LOC100383405), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545610.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020545608.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545617.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020545609.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545607.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545619.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020545616.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020545606.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545620.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020545618.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X13, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020545615.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||||*|||||||||||||*||| targets:465   AAAUGGAGUUCCCAAACUAGUCCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X10, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UUUA-CCCCAAGGGUUUGAUCUGGA   1   ||||-||||||||||||||||*||* targets:1778   AAAUUGGGGUUCCCAAACUAGCCCK   1802 Target Full Sequence	2.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|||||=|||||||||*||| targets:1306   AAAUAGGGUUUCCAAACUAGCCCU   1329 Target Full Sequence	2.5	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
BT084259.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|*|||||||||||||*||| targets:1009   AAAUUGAGUUCCCAAACUAGCCCU   1032 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967093.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|*|||||||||||||*||| targets:1005   AAAUUGAGUUCCCAAACUAGCCCU   1028 Target Full Sequence	2.5	Zea mays clone 299427 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150806.2	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|*|||||||||||||*||| targets:1055   AAAUUGAGUUCCCAAACUAGCCCU   1078 Target Full Sequence	2.5	Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA	NA	coding protein	psRNATarget
BT036076.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|*|||||||||||||*||| targets:867   AAAUAGAGUUCCCAAACUAGUCCU   890 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0094C03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547422.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ||||*|*|||||||||||||*||| targets:2346   AAAUAGAGUUCCCAAACUAGUCCU   2369 Target Full Sequence	2.5	PREDICTED: Zea mays 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (LOC100193732), transcript variant X6, mRNA	NA	coding protein	psRNATarget
AY110586.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   ***|||||||||||||||||*||* targets:5582   NNNUGGGGUUCCCAAACUAGCCCG   5605 Target Full Sequence	2.5	Zea mays CL1800_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   *|*||*||||||||||||||*||| targets:3522   UAUUGUGGUUCCCAAACUAGCCCU   3545 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UUUACCCCAAGGGUUUGAUCUGGA   1   *|*||*||||||||||||||*||| targets:3557   UAUUGUGGUUCCCAAACUAGCCCU   3580 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget