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BaseInfo

ncRNA ID novel_zma_miR7349
Species Zea mays
Class miRNA
Genome position Chr6:99966847-99966972 [+]
Reference genome RefGen_v4
Source SRR1743455
Length 24
Mature sequence(if miRNA) 103 - AUUCGGCACAAACGAACAAGGCCU - 126
Stem-loop(if miRNA) --                        --CACC      C     -    AACCAAA    --A  U
  GCUUUGUUCGUUUGUGUCGGAUUG      CGGAAU GUUCC AGCU       GUUU   UA A
  ||||||||||||||||||||||||      |||||| ||||| ||||       ||||   || A
  CGGAACAAGCAAACACGGCUUAAC      GCCUUG UAAGG UUGA       CGAA   AU A
UC                        CACCCA      C     A    --CCUAA    GAG  U
Stem-loop sequence GCUUUGUUCGUUUGUGUCGGAUUGCACCCGGAAUCGUUCCAGCUAACCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCAGUUAGGAAUCGUUCCGACCCACCAAUUCGGCACAAACGAACAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166406.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2559767 NA coding protein psRNATarget
JB166401.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2559767 NA coding protein psRNATarget
JB166400.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2559767 NA coding protein psRNATarget
HI405939.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2074227 NA coding protein psRNATarget
JB166397.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2559767 NA coding protein psRNATarget
HI405940.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2074227 NA coding protein psRNATarget
HI405945.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2074227 NA coding protein psRNATarget
LQ238069.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2985353 NA coding protein psRNATarget
HI405936.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2074227 NA coding protein psRNATarget
LQ238070.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2985353 NA coding protein psRNATarget
LQ238075.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2985353 NA coding protein psRNATarget
LQ238066.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2985353 NA coding protein psRNATarget
HI405933.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2074227 NA coding protein psRNATarget
JB166394.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2559767 NA coding protein psRNATarget
LQ238063.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2985353 NA coding protein psRNATarget
HI405804.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2074227 NA coding protein psRNATarget
LQ237934.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2985353 NA coding protein psRNATarget
JB166265.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2559767 NA coding protein psRNATarget
HI405948.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2074227 NA coding protein psRNATarget
JB166409.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2559767 NA coding protein psRNATarget
LQ238078.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2985353 NA coding protein psRNATarget
EU942882.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:71   AGGCCUUGUUCGUUUGUGCCGGAU   94

1.5 Zea mays clone 1543225 mRNA sequence NA coding protein psRNATarget
EZ109082.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:14   AGGCCUUGUUCGUUUGUGCCGGAU   37

1.5 TSA: Zea mays contig44741, mRNA sequence NA coding protein psRNATarget
EU953779.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:620   AGGCCUUGUUCGUUUGUGCCGGAU   643

1.5 Zea mays clone 1445891 mRNA sequence NA coding protein psRNATarget
AY107168.2
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:857   AGGCCUUGUUCGUUUGUGCCGGAU   880

1.5 Zea mays PCO087750 mRNA sequence NA coding protein psRNATarget
BT035415.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds NA coding protein psRNATarget
NM_001138362.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA NA coding protein psRNATarget
XM_020538690.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||||||||||||||||||||=||
targets:4118   AGGCCUUGUUCGUUUGUGCCGGAU   4141

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA NA coding protein psRNATarget
HI405951.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
JB166412.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
LQ238081.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
HI405930.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2074227 NA coding protein psRNATarget
LQ238060.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2985353 NA coding protein psRNATarget
JB166391.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2559767 NA coding protein psRNATarget
EZ061700.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||||=||||||||||||||||=||
targets:88   AGGCUUUGUUCGUUUGUGCCGGAU   111

1.5 TSA: Zea mays contig62822, mRNA sequence NA coding protein psRNATarget
BT017671.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:869   AGGUCUUGUUCGUUUGUGCCGGAU   892

1.5 Zea mays clone EL01N0442B02.c mRNA sequence NA coding protein psRNATarget
EU957814.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||||||||||=|||||||=|||||
targets:983   AGGCCUUGUUUGUUUGUGUCGAAU   1006

2.5 Zea mays clone 1624339 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020549216.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:138   AGGUCUUGUUCGUUUGUGCCGGAU   161

1.5 PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA NA coding protein psRNATarget
XM_020550140.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675573.2
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||=|||||||||||||||||=||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA NA coding protein psRNATarget
JB166393.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2559767 NA coding protein psRNATarget
HI405932.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2074227 NA coding protein psRNATarget
LQ238062.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2985353 NA coding protein psRNATarget
HI407238.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2074227 NA coding protein psRNATarget
JB167699.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2559767 NA coding protein psRNATarget
LQ239368.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  |||*|||||||||||||||||=||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2985353 NA coding protein psRNATarget
XM_020548712.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2055   AGACCUUGUUCGUUUGUGCCGGAU   2078

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008672661.2
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2137   AGACCUUGUUCGUUUGUGCCGGAU   2160

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548713.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2150   AGACCUUGUUCGUUUGUGCCGGAU   2173

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008672662.2
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2179   AGACCUUGUUCGUUUGUGCCGGAU   2202

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008672660.2
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2211   AGACCUUGUUCGUUUGUGCCGGAU   2234

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548714.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||||||=||
targets:2260   AGACCUUGUUCGUUUGUGCCGGAU   2283

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X5, mRNA NA coding protein psRNATarget
NM_001156479.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||||||||||||||||||||*||*
targets:1546   AGGCCUUGUUCGUUUGUGCCAAAA   1569

2.5 Zea mays bZIP transcription factor family protein (LOC100283578), mRNA NA coding protein psRNATarget
EU965197.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||||||||||||||||||||*||*
targets:1546   AGGCCUUGUUCGUUUGUGCCAAAA   1569

2.5 Zea mays clone 284430 bZIP transcription factor family protein mRNA, complete cds NA coding protein psRNATarget
XM_020544148.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||*||||||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020544147.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||*||||||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544149.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||*||||||||||||||*||||||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X5, mRNA NA coding protein psRNATarget
AY107839.1
ncRNA:24   UCCGGAACAAGCAAACACGGCUUA   1
  ||||-||||||||||||||||=|*
targets:1177   AGGC-UUGUUCGUUUGUGCCGGAN   1199

2.5 Zea mays PCO143146 mRNA sequence NA coding protein psRNATarget
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