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BaseInfo

ncRNA ID	novel_zma_miR7348
Species	Zea mays
Class	miRNA
Genome position	Chr7:179812702-179812804 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - UGUGAUCUCUGGUCACCAAAUCAG - 24
Stem-loop(if miRNA)	--           AA        UG  AG                   AGAA   GAUUUGGUGAC  GGGGAUCA  AG  GAUUGGAGGGGAUUGAGGG    A   |||||||||||  ||||||||  ||  |||||||||||||||||||   CUAAACCACUG  UCUCUAGU  UC  CUAACCUCCCCUAACUCCC    U GA           -G        GU  CU                   CAAG
Stem-loop sequence	GAUUUGGUGACAAGGGGAUCAUGAGAGGAUUGGAGGGGAUUGAGGGAGAAAUGAACCCCUCAAUCCCCUCCAAUCUCCUUGUGAUCUCUGGUCACCAAAUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235430.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   ||||||||||||||||=||||||= targets:7   CUGAUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
EZ095368.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   =|||||||||||=||||||||||= targets:36   UUGAUUUGGUGAUCAGAGAUCACG   59 Target Full Sequence	2.5	TSA: Zea mays contig31021, mRNA sequence	NA	coding protein	psRNATarget
HI403328.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   |||=||||||||||||=||||||= targets:7   CUGGUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1453 from Patent EP2074227	NA	coding protein	psRNATarget
JB163789.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   |||=||||||||||||=||||||= targets:7   CUGGUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1453 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235458.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   |||=||||||||||||=||||||= targets:7   CUGGUUUGGUGACCAGGGAUCACG   30 Target Full Sequence	2.5	Sequence 1453 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   =|||||||||||=||||||||||= targets:3291   UUGAUUUGGUGAUCAGAGAUCACG   3314 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   =|||||||||||=||||||||||= targets:3307   UUGAUUUGGUGAUCAGAGAUCACG   3330 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   =|||||||||||=||||||||||= targets:3311   UUGAUUUGGUGAUCAGAGAUCACG   3334 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU948260.1	ncRNA:24   GACUAAACCACUGGUCUCUAGUGU   1   =||-|||||||=|||||||||||= targets:325   UUG-UUUGGUGGCCAGAGAUCACG   347 Target Full Sequence	2.5	Zea mays clone 371984 mRNA sequence	NA	coding protein	psRNATarget