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BaseInfo

ncRNA ID	novel_zma_miR7345
Species	Zea mays
Class	miRNA
Genome position	Chr7:14291685-14291779 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	72 - AAGAUCUAUGGCGCCGACCCCCCU - 95
Stem-loop(if miRNA)	--              -       U            CC  A AC   UU   GGGGGUCGGCGCCA AGAUCUU GGCGCCGACCCC  UG C  GUG  C   |||||||||||||| ||||||| ||||||||||||  || |  |||   CCCCCAGCCGCGGU UCUAGAA CCGCGGCUGGGG  AC G  CGC  U UC              A       -            --  C -C   CG
Stem-loop sequence	GGGGGUCGGCGCCAAGAUCUUUGGCGCCGACCCCCCUGACACGUGUUCUGCCGCCGCCAGGGGUCGGCGCCAAGAUCUAUGGCGCCGACCCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545863.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   *||||||||||||||||||||||| targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   *||||||||||||||||||||||| targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ||||||||||||||||*||||||| targets:241   AGGGGGGUCGGCGCCACAGAUCUU   264 Target Full Sequence	1.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   =*|||||||||||||||||||||| targets:181   GCGGGGGUCGGCGCCAUAGAUCUU   204 Target Full Sequence	0.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   **|||||||||||||||||||||| targets:61   CAGGGGGUCGGCGCCAUAGAUCUU   84 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**||||||||||||||||||||| targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312 Target Full Sequence	0.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   **|*|||||||||||||||||||| targets:103   CAGAGGGUCGGCGCCAUAGAUCUU   126 Target Full Sequence	0.0	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_020549155.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   **|*|||||||||||||=|||||| targets:5   CAGAGGGUCGGCGCCAUGGAUCUU   28 Target Full Sequence	1.5	PREDICTED: Zea mays extensin-like (LOC109944402), mRNA	NA	coding protein	psRNATarget
EU948532.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |***||*||||||=|||||||||| targets:433   ACACGGCUCGGCGUCAUAGAUCUU   456 Target Full Sequence	2.5	Zea mays clone 379687 mRNA sequence	NA	coding protein	psRNATarget
XM_020543999.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |***||*||||||=|||||||||| targets:928   ACACGGCUCGGCGUCAUAGAUCUU   951 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544000.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |***||*||||||=|||||||||| targets:934   ACACGGCUCGGCGUCAUAGAUCUU   957 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ***|*|*||||||||||||||||| targets:780   UCCGAGCUCGGCGCCAUAGAUCUU   803 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|*|*||||||||||||||||| targets:128   ACCGAGCUCGGCGCCAUAGAUCUU   151 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ***|*|*||||||||||||||||| targets:1220   UCCGAGCUCGGCGCCAUAGAUCUU   1243 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|*|*||||||||||||||||| targets:126   ACCGAGCUCGGCGCCAUAGAUCUU   149 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ***|*|*||||||||||||||||| targets:1218   UCCGAGCUCGGCGCCAUAGAUCUU   1241 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|*|*||||||||||||||||| targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ***|*|*||||||||||||||||| targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|*|*||||||||||||||||| targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   ***|*|*||||||||||||||||| targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|***||||||||||||||||| targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85 Target Full Sequence	2.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|***||||||||||||||||| targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85 Target Full Sequence	2.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |**|***||||||||||||||||| targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85 Target Full Sequence	2.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:280   ACACAUCUCGGCGCCAUAGAUCUU   303 Target Full Sequence	2.0	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:228   ACGUACCUCGGCGCCAUAGAUCUU   251 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |*|****||||||||||||||||| targets:935   ACGUACCUCGGCGCCAUAGAUCUU   958 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.0	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:1754   ACACAUCUCGGCGCCAUAGAUCUU   1777 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:1779   ACACAUCUCGGCGCCAUAGAUCUU   1802 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   |******||||||||||||||||| targets:1786   ACACAUCUCGGCGCCAUAGAUCUU   1809 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068330.1	ncRNA:24   UCCCCCCAGCCGCGGUAUCUAGAA   1   *****|*||||||||||||||=|| targets:721   CCCUAGCUCGGCGCCAUAGAUUUU   744 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds	NA	coding protein	psRNATarget