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BaseInfo

ncRNA ID	novel_zma_miR7342
Species	Zea mays
Class	miRNA
Genome position	Chr6:9768965-9769091 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - GGCCUGUUUGGUUUGAUGCCUAAC - 24
Stem-loop(if miRNA)	--   C           A  C    -CUUA              ACUUUUCUGCCUA         C   A   GGC UGUUUGGUUUG UG CUAA     CCACACUUUGCCUA             AGGUUAGUU UUC A   ||| ||||||||||| || ||||     ||||||||||||||             ||||||||| ||| U   CCG ACAAACCAAGC AC GAUU     GGUGUGAAACGGAU             UCCAAUCAG AAG U CC   -           -  C    UACAC              -------------         C   C
Stem-loop sequence	GGCCUGUUUGGUUUGAUGCCUAACUUACCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGCCACGAACCAAACAGCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163656.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||||||*||||||||||| targets:105   GUUAGGCAUCAAUCCAAACAGGCC   128 Target Full Sequence	1.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||||||*||||||||||| targets:105   GUUAGGCAUCAAUCCAAACAGGCC   128 Target Full Sequence	1.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||||||*||||||||||| targets:105   GUUAGGCAUCAAUCCAAACAGGCC   128 Target Full Sequence	1.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||||| targets:105   GUUAGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	1.0	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
EZ091125.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*|||||||||||||||||= targets:57   GUUAGUCAUCAAACCAAACAGGCU   80 Target Full Sequence	2.0	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
LQ235427.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|=||||||||||||| targets:105   GUUAGGCAGCGAACCAAACAGGCC   128 Target Full Sequence	2.0	Sequence 1422 from Patent EP2985353	NA	coding protein	psRNATarget
HI403297.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|=||||||||||||| targets:105   GUUAGGCAGCGAACCAAACAGGCC   128 Target Full Sequence	2.0	Sequence 1422 from Patent EP2074227	NA	coding protein	psRNATarget
JB163758.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|=||||||||||||| targets:105   GUUAGGCAGCGAACCAAACAGGCC   128 Target Full Sequence	2.0	Sequence 1422 from Patent EP2559767	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*|||||||||||||||||= targets:241   GUUAGUCAUCAAACCAAACAGGCU   264 Target Full Sequence	2.0	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
EU967316.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||*||||||||||||||||||= targets:583   GUUAUGCAUCAAACCAAACAGGCU   606 Target Full Sequence	1.0	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235390.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1385 from Patent EP2985353	NA	coding protein	psRNATarget
HI403260.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1385 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235389.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1384 from Patent EP2985353	NA	coding protein	psRNATarget
HI403257.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1382 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235388.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1383 from Patent EP2985353	NA	coding protein	psRNATarget
HI403256.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1381 from Patent EP2074227	NA	coding protein	psRNATarget
HI403258.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1383 from Patent EP2074227	NA	coding protein	psRNATarget
JB163721.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1385 from Patent EP2559767	NA	coding protein	psRNATarget
HI403255.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1380 from Patent EP2074227	NA	coding protein	psRNATarget
HI403259.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1384 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235385.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1380 from Patent EP2985353	NA	coding protein	psRNATarget
JB163718.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1382 from Patent EP2559767	NA	coding protein	psRNATarget
JB163717.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1381 from Patent EP2559767	NA	coding protein	psRNATarget
JB163716.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1380 from Patent EP2559767	NA	coding protein	psRNATarget
JB163719.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1383 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235387.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1382 from Patent EP2985353	NA	coding protein	psRNATarget
JB163720.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1384 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235386.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||=|*|=||||||||||||| targets:105   GUUAGGUAGCGAACCAAACAGGCC   128 Target Full Sequence	3.0	Sequence 1381 from Patent EP2985353	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|||||||||||*||| targets:105   GUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	2.5	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|||||||||||*||| targets:105   GUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	2.5	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*|||||||||||*||| targets:105   GUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	2.5	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
EZ052567.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||*|||*||||||||||||||| targets:574   GUUAUGCAGCAAACCAAACAGGCC   597 Target Full Sequence	1.0	TSA: Zea mays contig53688, mRNA sequence	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   ||||||||*||||||||||||*|| targets:5   GUUAGGCAGCAAACCAAACAGCCC   28 Target Full Sequence	2.5	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*||||||||||||||*||| targets:1332   GUUAGACAUCAAACCAAACAAGCC   1355 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*|||||||||||||||*|| targets:1777   GUUAGUCAUCAAACCAAACAGACC   1800 Target Full Sequence	2.5	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*||||||||||||||*||| targets:2079   GUUAGACAUCAAACCAAACAAGCC   2102 Target Full Sequence	2.5	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*||||||||||||||*||| targets:2080   GUUAGACAUCAAACCAAACAAGCC   2103 Target Full Sequence	2.5	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |||||*|||||||||||||||*|| targets:1255   GUUAGUCAUCAAACCAAACAGACC   1278 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ094950.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   *||||*||*||||||||||||||= targets:7   AUUAGACAGCAAACCAAACAGGCU   30 Target Full Sequence	3.0	TSA: Zea mays contig30602, mRNA sequence	NA	coding protein	psRNATarget
NM_001328519.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   *|||*|||*|||||||||=||||| targets:521   UUUAUGCAGCAAACCAAAUAGGCC   544 Target Full Sequence	2.5	Zea mays hypothetical protein (pco113764), mRNA	NA	coding protein	psRNATarget
EU959044.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   *|||*|||*|||||||||=||||| targets:508   UUUAUGCAGCAAACCAAAUAGGCC   531 Target Full Sequence	2.5	Zea mays clone 209607 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541995.1	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   *|||*|||*|||||||||=||||| targets:522   UUUAUGCAGCAAACCAAAUAGGCC   545 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (pco113764), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649339.2	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |**||||*|==||||||||||||| targets:2437   GGCAGGCUUUGAACCAAACAGGCC   2460 Target Full Sequence	3.0	PREDICTED: Zea mays RNA-binding KH domain-containing protein (LOC100502234), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649338.2	ncRNA:24   CAAUCCGUAGUUUGGUUUGUCCGG   1   |**||||*|==||||||||||||| targets:2507   GGCAGGCUUUGAACCAAACAGGCC   2530 Target Full Sequence	3.0	PREDICTED: Zea mays RNA-binding KH domain-containing protein (LOC100502234), transcript variant X1, mRNA	NA	coding protein	psRNATarget