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BaseInfo

ncRNA ID	novel_zma_miR7341
Species	Zea mays
Class	miRNA
Genome position	Chr6:91296218-91296360 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	120 - GUAUCCAAACUAGCUCUAAAAGUU - 143
Stem-loop(if miRNA)	-CA      -            C   ----GAG         A  A   A  -G A     A AG  AU   CU    UUUUGG GCUAGUUUGGAU CAU       UUUUUAUGG GA UGG GG  A UUGAG G  AA  GGA  A    |||||| |||||||||||| |||       ||||||||| || ||| ||  | ||||| |  ||  |||  A    AAAAUC CGAUCAAACCUA GUG       AGAGAUACC CU ACC CC  U GACUC C  UU  CCU  U UUG      U            U   AUUAAUA         A  A   -  GA A     C GG  CC   UU
Stem-loop sequence	CAUUUUGGGCUAGUUUGGAUCCAUGAGUUUUUAUGGAGAAUGGAGGGAAUUGAGAGAGAAAUGGACUAAUUUUCCCCUUGGCCCUCAGAUAGCCCCAAUCACCAUAGAGAAUAAUUAGUGUAUCCAAACUAGCUCUAAAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008650695.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |||||||||||||||||||||||| targets:2319   AACUUUUAGAGCUAGUUUGGAUAC   2342 Target Full Sequence	0.0	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 23 (LOC103629612), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650696.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |||||||||||||||||||||||| targets:2315   AACUUUUAGAGCUAGUUUGGAUAC   2338 Target Full Sequence	0.0	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 23 (LOC103629612), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650697.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |||||||||||||||||||||||| targets:2288   AACUUUUAGAGCUAGUUUGGAUAC   2311 Target Full Sequence	0.0	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 23 (LOC103629612), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650698.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |||||||||||||||||||||||| targets:2284   AACUUUUAGAGCUAGUUUGGAUAC   2307 Target Full Sequence	0.0	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 23 (LOC103629612), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008655231.2	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2752   AACCCUUUUAGGGCUAGUUUGGAAAC   2777 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541149.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2667   AACCCUUUUAGGGCUAGUUUGGAAAC   2692 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541150.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2651   AACCCUUUUAGGGCUAGUUUGGAAAC   2676 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541151.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2611   AACCCUUUUAGGGCUAGUUUGGAAAC   2636 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020541153.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2532   AACCCUUUUAGGGCUAGUUUGGAAAC   2557 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020541152.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=|||||||||||*|| targets:2526   AACCCUUUUAGGGCUAGUUUGGAAAC   2551 Target Full Sequence	2.5	PREDICTED: Zea mays probable indole-3-acetic acid-amido synthetase GH3.11 (LOC103633549), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   UUG--AAAAUCUCGAUCAAACCUAUG   1   |||--||||||=*||||||||||||| targets:1335   AACCCUUUUAGGCCUAGUUUGGAUAC   1360 Target Full Sequence	2.0	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948984.1	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   *|=||||||=|||||||||||*|| targets:572   UAUUUUUAGGGCUAGUUUGGAAAC   595 Target Full Sequence	2.5	Zea mays clone 392710 mRNA sequence	NA	coding protein	psRNATarget
XM_008650840.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |=|*||||||*||||||||||||| targets:3339   AGCCUUUAGACCUAGUUUGGAUAC   3362 Target Full Sequence	1.0	PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA	NA	coding protein	psRNATarget
XM_020540884.1	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   **|*|||||=|=|||||||||||| targets:3831   CCCGUUUAGGGUUAGUUUGGAUAC   3854 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
BT016468.1	ncRNA:24   UUGA-----AAAUCUCGAUCAAACCUAUG   1   ||=|-----|||||=|||||||||||*|| targets:931   AAUUAUAUAUUUAGGGCUAGUUUGGAAAC   959 Target Full Sequence	2.5	Zea mays clone Contig301 mRNA sequence	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   *=|*|||||=*||||||||||||| targets:258   UGCCUUUAGGCCUAGUUUGGAUAC   281 Target Full Sequence	2.0	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   UU---GAAAAUCUCGAUCAAACCUAUG   1   ||---||*||||=|||||||||||*|| targets:1539   AAUCUCUGUUAGGGCUAGUUUGGAAAC   1565 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   UU---GAAAAUCUCGAUCAAACCUAUG   1   ||---||*||||=|||||||||||*|| targets:1453   AAUCUCUGUUAGGGCUAGUUUGGAAAC   1479 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   UU---GAAAAUCUCGAUCAAACCUAUG   1   ||---||*||||=|||||||||||*|| targets:1410   AAUCUCUGUUAGGGCUAGUUUGGAAAC   1436 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   UU---GAAAAUCUCGAUCAAACCUAUG   1   ||---||*||||=|||||||||||*|| targets:1409   AAUCUCUGUUAGGGCUAGUUUGGAAAC   1435 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   UU---GAAAAUCUCGAUCAAACCUAUG   1   ||---||*||||=|||||||||||*|| targets:1366   AAUCUCUGUUAGGGCUAGUUUGGAAAC   1392 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008680878.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   **||*||||=|||||||||||*|| targets:1514   UUCUGUUAGGGCUAGUUUGGAAAC   1537 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin protein ligase RIE1 (LOC103654076), mRNA	NA	coding protein	psRNATarget
BT019068.1	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   |=*|*||||=*||||||||||||| targets:139   AGAUCUUAGGUCUAGUUUGGAUAC   162 Target Full Sequence	2.0	Zea mays clone Contig631.F mRNA sequence	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   *|=*|||||*|||||||||||*|| targets:5267   CAUCUUUAGUGCUAGUUUGGAAAC   5290 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   UUGAAAAUCUCGAUCAAACCUAUG   1   *|=*|||||*|||||||||||*|| targets:5133   CAUCUUUAGUGCUAGUUUGGAAAC   5156 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget