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BaseInfo

ncRNA ID novel_zma_miR7338
Species Zea mays
Class miRNA
Genome position Chr6:15065595-15065796 [-]
Reference genome RefGen_v4
Source SRR2647391
Length 24
Mature sequence(if miRNA) 1 - AUCUGAUCUAUGGCAAGGAAACAU - 24
Stem-loop(if miRNA) --                C  C   CA                       A     C       CUUA  U                         ACAUG
  GUUUCCUUGCCAUAGA CA AUU  UGGAUUUUUGGUGGAGACCAUUU UUGGU AAAAAUC    GG GUUAGCCUUCGGUAUUAUUGAAAAU     A
  |||||||||||||||| || |||  ||||||||||||||||||||||| ||||| |||||||    || |||||||||||||||||||||||||
  CAAAGGAACGGUAUCU GU UAA  ACCUAAAGACCACCUCUGGUAAA AACCA UUUUUAG    CC CAAUCGGAAGCCAUAAUAACUUUUA     A
UA                A  C   AA                       G     C       UCAA  C                         CCAGC
Stem-loop sequence GUUUCCUUGCCAUAGACCACAUUCAUGGAUUUUUGGUGGAGACCAUUUAUUGGUCAAAAAUCCUUAGGUGUUAGCCUUCGGUAUUAUUGAAAAUACAUGAACGACCAUUUUCAAUAAUACCGAAGGCUAACCCCAACUGAUUUUUCACCAAGAAAUGGUCUCCACCAGAAAUCCAAAAAUCUGAUCUAUGGCAAGGAAACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ094456.1
ncRNA:24   UACAAAGGAACGGUAUCUAGUCUA   1
  |||||||||||||||||||||*||
targets:105   AUGUUUCCUUGCCAUAGAUCACAU   128

1.5 TSA: Zea mays contig30108, mRNA sequence NA coding protein psRNATarget