ncRNA ID | novel_zma_miR7338 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:15065595-15065796 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647391 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUCUGAUCUAUGGCAAGGAAACAU - 24 |
Stem-loop(if miRNA) |
--                C  C   CA                       A     C       CUUA  U                         ACAUG   GUUUCCUUGCCAUAGA CA AUU  UGGAUUUUUGGUGGAGACCAUUU UUGGU AAAAAUC    GG GUUAGCCUUCGGUAUUAUUGAAAAU     A   |||||||||||||||| || |||  ||||||||||||||||||||||| ||||| |||||||    || |||||||||||||||||||||||||   CAAAGGAACGGUAUCU GU UAA  ACCUAAAGACCACCUCUGGUAAA AACCA UUUUUAG    CC CAAUCGGAAGCCAUAAUAACUUUUA     A UA                A  C   AA                       G     C       UCAA  C                         CCAGC |
Stem-loop sequence | GUUUCCUUGCCAUAGACCACAUUCAUGGAUUUUUGGUGGAGACCAUUUAUUGGUCAAAAAUCCUUAGGUGUUAGCCUUCGGUAUUAUUGAAAAUACAUGAACGACCAUUUUCAAUAAUACCGAAGGCUAACCCCAACUGAUUUUUCACCAAGAAAUGGUCUCCACCAGAAAUCCAAAAAUCUGAUCUAUGGCAAGGAAACAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ094456.1 |
|
1.5 | TSA: Zea mays contig30108, mRNA sequence | NA | coding protein | psRNATarget |