Search result

BaseInfo

ncRNA ID	novel_zma_miR7335
Species	Zea mays
Class	miRNA
Genome position	Chr6:30350949-30351059 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	23
Mature sequence(if miRNA)	1 - GAUUUGGUGACAAGAGGAUCACG - 23
Stem-loop(if miRNA)	--           AA              A  U   A GA     G        AA   GAUUUGGUGAC  GAGGAUCACGGGAG AU GGA A  AUUGA GGGGAAAU  A   |||||||||||  |||||||||||||| || ||| |  ||||| ||||||||   CUAAACCACUG  UUCCUAGUGCCCUC UA UCU U  UAACU CCUCUUUA  C GA           -G              C  C   C AC     A        AU
Stem-loop sequence	GAUUUGGUGACAAGAGGAUCACGGGAGAAUUGGAAAGAAUUGAGGGGGAAAUAAACUAAUUUCUCCAUCAAUCAUCUCUCAUCCUCCCGUGAUCCUUGGUCACCAAAUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ082583.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =|||||||||||||||=|||||| targets:15   UGUGAUCCUCUUGUCAUCAAAUC   37 Target Full Sequence	1.5	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*|||||||||||||| targets:297   CGUGAUCCCCUUGUCACCAAAUC   319 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*|||||||||||||| targets:157   CGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*|||||||||||||| targets:157   CGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*|||||||||||||| targets:157   CGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*||||||=||||||| targets:1824   CGUGAUCCCCUUGUCGCCAAAUC   1846 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||||||||*|||||||||||||* targets:400   CGUGAUCCCCUUGUCACCAAAUG   422 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
EU969052.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   *|||||||*|||||=|||||||| targets:1593   GGUGAUCCACUUGUUACCAAAUC   1615 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
JB170124.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:93   CGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:93   CGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:93   CGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:103   CGGGAUCCCCUUGUCACCAAAUC   125 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:847   CGGGAUCCCCUUGUCACCAAAUC   869 Target Full Sequence	1.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:886   CGGGAUCCCCUUGUCACCAAAUC   908 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:891   CGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	1.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:891   CGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU973567.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:111   CGGGAUCCCCUUGUCACCAAAUC   133 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   ||*|||||*|||||||||||||| targets:1496   CGGGAUCCCCUUGUCACCAAAUC   1518 Target Full Sequence	1.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =*||||||*|||*|||||||||| targets:1649   UAUGAUCCACUUAUCACCAAAUC   1671 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =*||||||*|||*|||||||||| targets:1649   UAUGAUCCACUUAUCACCAAAUC   1671 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =*||||||*|||*|||||||||| targets:1757   UAUGAUCCACUUAUCACCAAAUC   1779 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget
XM_008680497.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =||*||*|||||||*|||||||| targets:96   UGUAAUGCUCUUGUGACCAAAUC   118 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653665 (LOC103653665), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008680496.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =||*||*|||||||*|||||||| targets:96   UGUAAUGCUCUUGUGACCAAAUC   118 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653665 (LOC103653665), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680494.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =||*||*|||||||*|||||||| targets:95   UGUAAUGCUCUUGUGACCAAAUC   117 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653665 (LOC103653665), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680493.2	ncRNA:23   GCACUAGGAGAACAGUGGUUUAG   1   =||*||*|||||||*|||||||| targets:96   UGUAAUGCUCUUGUGACCAAAUC   118 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653665 (LOC103653665), transcript variant X1, mRNA	NA	coding protein	psRNATarget