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BaseInfo

ncRNA ID novel_zma_miR7327
Species Zea mays
Class miRNA
Genome position Chr6:148812714-148812878 [+]
Reference genome RefGen_v4
Source SRR2647391
Length 21
Mature sequence(if miRNA) 145 - UUGAUAGAUAGAUCGAUCUCU - 165
Stem-loop(if miRNA) AU         --        GC    A   CCA      AAUAGA  AAUCUCUAUUAGGCAAGGAUAUCCAUUGAUUGGGU
  AGAUCGAUC  UCUAUUAG  AAGA UCU   CUGAUA      UC                                   U
  |||||||||  ||||||||  |||| |||   ||||||      ||
  UCUAGCUAG  AGAUAGUU  UUCU AGA   GAUUAU      CU                                   A
UC         AU        GC    -   AUG      CAUUAA  AUAUAGAAAGAUAGGAUCGGUAUAUCCGUCCUAAG
Stem-loop sequence AUAGAUCGAUCUCUAUUAGGCAAGAAUCUCCACUGAUAAAUAGAUCAAUCUCUAUUAGGCAAGGAUAUCCAUUGAUUGGGUUAGAAUCCUGCCUAUAUGGCUAGGAUAGAAAGAUAUAUCAAUUACUAUUAGGUAAGAUCUUCGUUGAUAGAUAGAUCGAUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU959502.1
ncRNA:21   UCUCUAGCUAGAUAGAUAGUU   1
  |||||||*|||||||||||=|
targets:33   AGAGAUCUAUCUAUCUAUCGA   53

2.5 Zea mays clone 218360 profilin A mRNA, complete cds NA coding protein psRNATarget
EF546785.1
ncRNA:21   UCUCUAGCUAGAUAGAUAGUU   1
  |||||||*|||||||||||=|
targets:2   AGAGAUCUAUCUAUCUAUCGA   22

2.5 Zea mays pollen-specific profilin3 mRNA, complete cds NA coding protein psRNATarget
EU962206.1
ncRNA:21   UCUCUAGCUAGAUAGAUAGUU   1
  =||||||*||||||||||||=
targets:1533   GGAGAUCCAUCUAUCUAUCAG   1553

2.0 Zea mays clone 240947 24-methylenesterol C-methyltransferase 2 mRNA, complete cds NA coding protein psRNATarget
NM_001155659.1
ncRNA:21   UCUCUAGCUAGAUAGAUAGUU   1
  =||||||*||||||||||||=
targets:1533   GGAGAUCCAUCUAUCUAUCAG   1553

2.0 Zea mays 24-methylenesterol C-methyltransferase 2 (LOC100282753), mRNA NA coding protein psRNATarget
EU966515.1
ncRNA:21   UCUCUAGCUAGAUAGAUAGUU   1
  =||||||*||||||||||||=
targets:1508   GGAGAUCCAUCUAUCUAUCAG   1528

2.0 Zea mays clone 294969 mRNA sequence NA coding protein psRNATarget
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