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BaseInfo

ncRNA ID	novel_zma_miR7321
Species	Zea mays
Class	miRNA
Genome position	Chr5:35261520-35261615 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - AUAAUCUGGACAUAUUAUAAUUCC - 24
Stem-loop(if miRNA)	--         C    -   G     A    C  C      U          AAUUAUAAU UGUC AGA UUAUA AAUC AA AUAUUU AAAUUGAA   ||||||||| |||| ||| ||||| |||| || |||||| |||||||U   UUAAUAUUA ACAG UCU AAUAU UUAG UU UAUAAA UUUGAUUG CC         U    G   -     A    A  A      -
Stem-loop sequence	AAUUAUAAUCUGUCAGAGUUAUAAAAUCCAACAUAUUUUAAAUUGAAUGUUAGUUUAAAUAUAUUAGAUUAUAUAAUCUGGACAUAUUAUAAUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137382.1	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   ||=||||||||||||=|||||||| targets:620   GGGAUUAUAAUAUGUUCAGAUUAU   643 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191958 (LOC100191958), mRNA	NA	coding protein	psRNATarget
BT034217.1	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   ||=||||||||||||=|||||||| targets:620   GGGAUUAUAAUAUGUUCAGAUUAU   643 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0032A11 mRNA, complete cds	NA	coding protein	psRNATarget
EU945446.1	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   |||||||||||*|||||||||||| targets:431   GGAAUUAUAAUCUGUCCAGAUUAU   454 Target Full Sequence	1.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||||||||||||||| targets:4976   UGAGAUUAUAAUAUGUCCAGAUUAU   5000 Target Full Sequence	0.0	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU944194.1	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   ||=||||||||*|||||||||||| targets:277   GGGAUUAUAAUCUGUCCAGAUUAU   300 Target Full Sequence	1.5	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   ||=||||||||*|||||||||||| targets:251   GGGAUUAUAAUCUGUCCAGAUUAU   274 Target Full Sequence	1.5	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
HI403423.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
JB163768.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
HI403307.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
JB163884.1	ncRNA:24   CCU-UAAUAUUAUACAGGUCUAAUA   1   *||-||||||||*|||||||||||| targets:15   UGAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	1.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008683420.2	ncRNA:24   CCUUAAUAUUAUACAGGUCUAAUA   1   **=||||||*||||||=||||||| targets:343   UAGAUUAUAUUAUGUCUAGAUUAU   366 Target Full Sequence	2.5	PREDICTED: Zea mays DnaJ/Hsp40 cysteine-rich domain superfamily protein (LOC100276646), transcript variant X1, mRNA	NA	coding protein	psRNATarget