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BaseInfo

ncRNA ID	novel_zma_miR7317
Species	Zea mays
Class	miRNA
Genome position	Chr10:106035138-106035231 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	23
Mature sequence(if miRNA)	72 - AUCUCCUCCAAUCUAUAUGGAUU - 94
Stem-loop(if miRNA)	--        A    AG     -     UGAAUUUCAAUACAUAAUA   UCCAUAUG AUUG  GGGGA UUGAG                   A   |||||||| ||||  ||||| |||||                   G   AGGUAUAU UAAC  CCUCU AUUAU                   U UU        C    CU     A     UCCUAAUCUUCUUUAAAAU
Stem-loop sequence	UCCAUAUGAAUUGAGGGGGAUUGAGUGAAUUUCAAUACAUAAUAAGUUAAAAUUUCUUCUAAUCCUUAUUAAUCUCCUCCAAUCUAUAUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170278.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:10   AAUCCAUAUGGAUUGGAGGGGAU   32 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:10   AAUCCAUAUGGAUUGGAGGGGAU   32 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:10   AAUCCAUAUGGAUUGGAGGGGAU   32 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:33   AAUCCAUAUGGAUUGGAGGGGAU   55 Target Full Sequence	2.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
HI408824.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:11   AAUCCAUAUGGAUUGGAGGGGAU   33 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:11   AAUCCAUAUGGAUUGGAGGGGAU   33 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:11   AAUCCAUAUGGAUUGGAGGGGAU   33 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
EU944315.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:105   AAUCCAUAUGGAUUGGAGGGGAU   127 Target Full Sequence	2.5	Zea mays clone 210152 mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:779   AAUCCAUAUGGAUUGGAGGGGAU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:395   AAUCCAUAUGGAUUGGAGGGGAU   417 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT041645.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1249   AAUCCAUAUGGAUUGGAGGGGAU   1271 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1134   AAUCCAUAUGGAUUGGAGGGGAU   1156 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT085188.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1290   AAUCCAUAUGGAUUGGAGGGGAU   1312 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1166   AAUCCAUAUGGAUUGGAGGGGAU   1188 Target Full Sequence	2.5	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1003   AAUCCAUAUGGAUUGGAGGGGAU   1025 Target Full Sequence	2.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU959771.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1245   AAUCCAUAUGGAUUGGAGGGGAU   1267 Target Full Sequence	2.5	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
BT042625.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:769   AAUCCAUAUGGAUUGGAGGGGAU   791 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0379P04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1538   AAUCCAUAUGGAUUGGAGGGGAU   1560 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1538   AAUCCAUAUGGAUUGGAGGGGAU   1560 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548795.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=|||||||||=||| targets:1309   AAUCCAUAUGGAUUGGAGGGGAU   1331 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275326 (LOC100275326), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042734.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   ||||||||||*|||||||||||| targets:1554   AAUCCAUAUAUAUUGGAGGAGAU   1576 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0031O01 mRNA, complete cds	NA	coding protein	psRNATarget
BT042734.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |*|=||*|||*|||||||||||| targets:1575   AUUUCAAAUAAAUUGGAGGAGAU   1597 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0031O01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148663.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   ||||||||||*|||||||||||| targets:1554   AAUCCAUAUAUAUUGGAGGAGAU   1576 Target Full Sequence	1.5	Zea mays Nucleotide-diphospho-sugar transferase family protein (LOC100274299), mRNA	NA	coding protein	psRNATarget
NM_001148663.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |*|=||*|||*|||||||||||| targets:1575   AUUUCAAAUAAAUUGGAGGAGAU   1597 Target Full Sequence	2.5	Zea mays Nucleotide-diphospho-sugar transferase family protein (LOC100274299), mRNA	NA	coding protein	psRNATarget
NM_001350187.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   *||||||||=|||||||||=||| targets:1558   UAUCCAUAUGGAUUGGAGGGGAU   1580 Target Full Sequence	2.5	Zea mays mTERF family protein (LOC100283286), mRNA	NA	coding protein	psRNATarget
EU967708.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=*|||||||||||| targets:1041   AAUCCAUAUGAAUUGGAGGAGAU   1063 Target Full Sequence	2.5	Zea mays clone 305479 RER1A protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539599.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||||||||=||||||||*|||| targets:2775   AAUCCAUAUGGAUUGGAGAAGAU   2797 Target Full Sequence	2.5	PREDICTED: Zea mays succinate dehydrogenase9 (LOC103630508), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406849.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:12   AAUACAUAUGGAUUGGAUGAGAU   34 Target Full Sequence	2.5	Sequence 4974 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238979.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:12   AAUACAUAUGGAUUGGAUGAGAU   34 Target Full Sequence	2.5	Sequence 4974 from Patent EP2985353	NA	coding protein	psRNATarget
JB167310.1	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:12   AAUACAUAUGGAUUGGAUGAGAU   34 Target Full Sequence	2.5	Sequence 4974 from Patent EP2559767	NA	coding protein	psRNATarget
BT062183.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:179   AAUACAUAUGGAUUGGAUGAGAU   201 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:881   AAUACAUAUGGAUUGGAUGAGAU   903 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:3327   AAUACAUAUGGAUUGGAUGAGAU   3349 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:3340   AAUACAUAUGGAUUGGAUGAGAU   3362 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:23   UUAGGUAUAUCUAACCUCCUCUA   1   |||*|||||=|||||||*||||| targets:3371   AAUACAUAUGGAUUGGAUGAGAU   3393 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957033.1	ncRNA:23   UUA-GGUAUAUCUAACCUCCUCUA   1   *||-||||||=|||||||*||||| targets:1330   UAUACCAUAUGGAUUGGAUGAGAU   1353 Target Full Sequence	2.5	Zea mays clone 1581039 mRNA sequence	NA	coding protein	psRNATarget
EU957741.1	ncRNA:23   UUA-GGUAUAUCUAACCUCCUCUA   1   *||-||||||=|||||||*||||| targets:1331   UAUACCAUAUGGAUUGGAUGAGAU   1354 Target Full Sequence	2.5	Zea mays clone 1613489 mRNA sequence	NA	coding protein	psRNATarget