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BaseInfo

ncRNA ID	novel_zma_miR7309
Species	Zea mays
Class	miRNA
Genome position	Chr5:146754135-146754233 [+]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - AGUCUCUCCAUUUUAUUUCAUUUU - 24
Stem-loop(if miRNA)	--       C          CAU                      --AC G   AGUCUCU CAUUUUAUUU   UUUAGUCUUUAAAUUACCAAAU    G A   ||||||| ||||||||||   ||||||||||||||||||||||    |   UCAGGGA GUAAAAUAAA   AAGUCAGGGAUUUAAUGGUUUA    C A AA       A          -AU                      ACAU A
Stem-loop sequence	AGUCUCUCCAUUUUAUUUCAUUUUAGUCUUUAAAUUACCAAAUACGGAAACUACAAUUUGGUAAUUUAGGGACUGAAUAAAAUAAAAUGAAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651702.2	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=|||||||||||||||=|||| targets:575   AAAGUGAAAUAAAAUGGAGGGACU   598 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:68   AAAGUGGAAUAAAAUGGAGGGACU   91 Target Full Sequence	2.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:68   AAAGUGGAAUAAAAUGGAGGGACU   91 Target Full Sequence	2.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:68   AAAGUGGAAUAAAAUGGAGGGACU   91 Target Full Sequence	2.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:1235   AAAGUGGAAUAAAAUGGAGGGACU   1258 Target Full Sequence	2.5	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:113   AAAGUGGAAUAAAAUGGAGGGACU   136 Target Full Sequence	2.5	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||||||||=|||| targets:1752   AAAGUGGAAUAAAAUGGAGGGACU   1775 Target Full Sequence	2.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547055.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||||*|||||||||||||=|||| targets:401   AAAAUAAAAUAAAAUGGAGGGACU   424 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547054.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||||*|||||||||||||=|||| targets:403   AAAAUAAAAUAAAAUGGAGGGACU   426 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||*|||||||||| targets:2693   AAAGUGGAAUAAAUUGGAGAGACU   2716 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   |||=||=||||||*|||||||||| targets:3082   AAAGUGGAAUAAAUUGGAGAGACU   3105 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY106862.1	ncRNA:24   UUUUACUUUAUUUUACCUCUCUGA   1   *=||||=|||||||||||*||||| targets:457   UGAAUGGAAUAAAAUGGAUAGACU   480 Target Full Sequence	2.5	Zea mays PCO139775 mRNA sequence	NA	coding protein	psRNATarget