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BaseInfo

ncRNA ID	novel_zma_miR7305
Species	Zea mays
Class	miRNA
Genome position	Chr4:37576082-37576169 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	23
Mature sequence(if miRNA)	66 - GGAUUUAAUCUCACCAUGGGAUU - 88
Stem-loop(if miRNA)	--    UU                 G   G  A   A      C   GGAU  AAUCUCACCAUGGGAUU AGU UG GGU UGGAUU A   ||||  ||||||||||||||||| ||| || ||| |||||| C   CCUA  UUAGGGUGGUACCUUAA UUA GC CCA ACCUAA C UC    UU                 A   G  -   G      C
Stem-loop sequence	GGAUUUAAUCUCACCAUGGGAUUGAGUGUGAGGUAUGGAUUCACCCAAUCCAGACCCGGAUUAAAUUCCAUGGUGGGAUUUUAUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170027.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	1.5	Sequence 7691 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241696.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	1.5	Sequence 7691 from Patent EP2985353	NA	coding protein	psRNATarget
HI409566.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	1.5	Sequence 7691 from Patent EP2074227	NA	coding protein	psRNATarget
BT041458.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||=|=||||||=|||||||||| targets:1114   AAUUCUAUGGUGGGAUUAAAUCC   1136 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044D11 mRNA, complete cds	NA	coding protein	psRNATarget
BT037522.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||=|=||||||=|||||||||| targets:1120   AAUUCUAUGGUGGGAUUAAAUCC   1142 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176B05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111641.2	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||=|=||||||=|||||||||| targets:1182   AAUUCUAUGGUGGGAUUAAAUCC   1204 Target Full Sequence	2.5	Zea mays Glutathione transferase III(b) (gst3b), mRNA	NA	coding protein	psRNATarget
HI405812.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||||||||*||=|||||||||| targets:51   AAUCCCAUGAUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 3937 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237942.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||||||||*||=|||||||||| targets:51   AAUCCCAUGAUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 3937 from Patent EP2985353	NA	coding protein	psRNATarget
JB166273.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   |||||||||*||=|||||||||| targets:51   AAUCCCAUGAUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 3937 from Patent EP2559767	NA	coding protein	psRNATarget
BT066966.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:3353   AAUCACAUGGUGGGAUUAAAUCC   3375 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0125G04 mRNA, complete cds	NA	coding protein	psRNATarget
BT064393.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:3542   AAUCACAUGGUGGGAUUAAAUCC   3564 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165C21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175191.1	ncRNA:23   UUAGGGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:3542   AAUCACAUGGUGGGAUUAAAUCC   3564 Target Full Sequence	2.5	Zea mays putative RNA helicase family protein (LOC100382450), mRNA	NA	coding protein	psRNATarget