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BaseInfo

ncRNA ID novel_zma_miR7295
Species Zea mays
Class miRNA
Genome position Chr4:143296002-143296067 [-]
Reference genome RefGen_v4
Source SRR2647391
Length 23
Mature sequence(if miRNA) 44 - UAUUCUAUUUUAGUCACUAAAUU - 66
Stem-loop(if miRNA) --UA   U      G  A        C      U
    UUC AUUUUA UC CUAAAUUG UAAAUA A
    ||| |||||| || |||||||| ||||||
    AAG UAAAAU AG GAUUUAAC AUUUAU C
AAAA   -      G  -        A      U
Stem-loop sequence UAUUCUAUUUUAGUCACUAAAUUGCUAAAUAUACUUAUUUAACAAUUUAGGAGUAAAAUGAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235124.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
HI402994.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
EU967664.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:1207   AAUUUAGGGACUAAAAUGGAAUA   1229

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:1207   AAUUUAGGGACUAAAAUGGAAUA   1229

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
EZ103355.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:62   AAUUUAGAGACUAAAAUGGAAUA   84

2.5 TSA: Zea mays contig39012, mRNA sequence NA coding protein psRNATarget
HI403318.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2074227 NA coding protein psRNATarget
JB163779.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2559767 NA coding protein psRNATarget
JB163694.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2559767 NA coding protein psRNATarget
HI403311.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2074227 NA coding protein psRNATarget
JB163772.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2559767 NA coding protein psRNATarget
LQ235579.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2985353 NA coding protein psRNATarget
HI403268.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2074227 NA coding protein psRNATarget
JB163803.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2559767 NA coding protein psRNATarget
HI403345.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2074227 NA coding protein psRNATarget
HI403233.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2074227 NA coding protein psRNATarget
HI403449.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2074227 NA coding protein psRNATarget
LQ235472.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2985353 NA coding protein psRNATarget
JB163806.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2559767 NA coding protein psRNATarget
JB163910.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2559767 NA coding protein psRNATarget
HI403400.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2074227 NA coding protein psRNATarget
LQ235398.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2985353 NA coding protein psRNATarget
HI403398.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2074227 NA coding protein psRNATarget
JB163861.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2559767 NA coding protein psRNATarget
LQ235441.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2985353 NA coding protein psRNATarget
LQ235475.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2985353 NA coding protein psRNATarget
LQ235528.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2985353 NA coding protein psRNATarget
HI403342.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2074227 NA coding protein psRNATarget
JB163859.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2559767 NA coding protein psRNATarget
LQ235448.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2985353 NA coding protein psRNATarget
LQ235363.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2985353 NA coding protein psRNATarget
LQ235530.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2985353 NA coding protein psRNATarget
JB163729.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2559767 NA coding protein psRNATarget
HI403239.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2074227 NA coding protein psRNATarget
JB163700.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2559767 NA coding protein psRNATarget
LQ235369.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2985353 NA coding protein psRNATarget
LQ235433.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2985353 NA coding protein psRNATarget
JB163764.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2559767 NA coding protein psRNATarget
HI403303.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2074227 NA coding protein psRNATarget
LQ235460.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2985353 NA coding protein psRNATarget
JB163791.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2559767 NA coding protein psRNATarget
HI403330.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*|||||||||=|||||
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2074227 NA coding protein psRNATarget
XM_020547858.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||*||||||*||||||||||
targets:1649   AAUUUUGUGACUUAAAUAGAAUA   1671

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
BT083561.2
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||*||||*||||||||||
targets:285   AAUUUAGGGACUUAAAUAGAAUA   307

2.5 Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds NA coding protein psRNATarget
EZ060524.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  ||||||**|||||||||||||||
targets:152   AAUUUAUAGACUAAAAUAGAAUA   174

2.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
LQ235170.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||*||||||*||||||||||
targets:112   AAUUUUGUGACUUAAAUAGAAUA   134

2.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
HI403040.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||*||||||*||||||||||
targets:112   AAUUUUGUGACUUAAAUAGAAUA   134

2.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
JB163501.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||*||||||*||||||||||
targets:112   AAUUUUGUGACUUAAAUAGAAUA   134

2.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
HI403419.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
LQ235549.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
HI403309.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
JB163770.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
JB163880.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
LQ235439.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||||||**||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

2.0 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
BT063047.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||*|||*||||||*||||||||
targets:2162   AAUCUAGGGACUAAUAUAGAAUA   2184

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  |||*|||*||||||*||||||||
targets:2162   AAUCUAGGGACUAAUAUAGAAUA   2184

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
HI402995.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  ||||||***||||||||||||||
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

3.0 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
LQ235125.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  ||||||***||||||||||||||
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

3.0 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
JB163456.1
ncRNA:23   UUAAAUCACUGAUUUUAUCUUAU   1
  ||||||***||||||||||||||
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

3.0 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
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