Search result

BaseInfo

ncRNA ID	novel_zma_miR7291
Species	Zea mays
Class	miRNA
Genome position	Chr4:237407181-237407311 [-]
Reference genome	RefGen_v4
Source	SRR1743455
Length	19
Mature sequence(if miRNA)	113 - UGUAGUACUCCCUCCGUUC - 131
Stem-loop(if miRNA)	--      A  C        C  UUU          G UU   C   ------A  AUGUUCUUUUUU   UGUAGU CU CCUCCGUU UU   UAUUUGUUGC U  UAG UCA       AA            A   |||||| || |||||||| ||   |||||||||| |  ||| |||       ||            U   AUAUCA GA GGAGGCGA AG   AUAAACAGCG G  AUC AGU       CG            U UU      C  U        A  CUU          G CC   A   AAAAACU  AUUUUGCGUUGU
Stem-loop sequence	UGUAGUACUCCCUCCGUUCUUUUUUAUUUGUUGCGUUUUAGCUCAAAAAUGUUCUUUUUUAUUUGUUGCGUUUUAGCUCAAAAAUGAACUACCGGGCGACAAAUAUUCGAAAGCGGAGGUAGCACUAUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235424.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||| targets:80   AAACGGAGGGAGUACUACA   98 Target Full Sequence	1.0	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
JB163755.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||| targets:80   AAACGGAGGGAGUACUACA   98 Target Full Sequence	1.0	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
HI403294.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||| targets:80   AAACGGAGGGAGUACUACA   98 Target Full Sequence	1.0	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550362.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||||||* targets:489   GAACGGAGGGAGUACUACC   507 Target Full Sequence	1.0	PREDICTED: Zea mays protein ALP1-like (LOC103650735), mRNA	NA	coding protein	psRNATarget
JB163817.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   |||||||||||||||||*| targets:81   GAACGGAGGGAGUACUAAA   99 Target Full Sequence	1.5	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
HI403356.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   |||||||||||||||||*| targets:81   GAACGGAGGGAGUACUAAA   99 Target Full Sequence	1.5	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   |||||||||||||||||*| targets:81   GAACGGAGGGAGUACUAAA   99 Target Full Sequence	1.5	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *||||||||||||||||=| targets:1358   AAACGGAGGGAGUACUAUA   1376 Target Full Sequence	2.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *||||||||||||||||=| targets:1358   AAACGGAGGGAGUACUAUA   1376 Target Full Sequence	2.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
LQ240753.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||* targets:79   AAACGGAGGGAGUACUACU   97 Target Full Sequence	2.0	Sequence 6748 from Patent EP2985353	NA	coding protein	psRNATarget
HI408623.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||* targets:79   AAACGGAGGGAGUACUACU   97 Target Full Sequence	2.0	Sequence 6748 from Patent EP2074227	NA	coding protein	psRNATarget
JB169084.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||||||* targets:79   AAACGGAGGGAGUACUACU   97 Target Full Sequence	2.0	Sequence 6748 from Patent EP2559767	NA	coding protein	psRNATarget
EU967465.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:473   GAACGGAGGGAGUAGUACG   491 Target Full Sequence	2.5	Zea mays clone 303406 mRNA sequence	NA	coding protein	psRNATarget
EU944783.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:1082   GAACGGAGGGAGUAGUACG   1100 Target Full Sequence	2.5	Zea mays clone 230192 mRNA sequence	NA	coding protein	psRNATarget
BT061350.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:1437   GAACGGAGGGAGUAGUACG   1455 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138A20 mRNA, complete cds	NA	coding protein	psRNATarget
BT035622.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:1363   GAACGGAGGGAGUAGUACG   1381 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0072J15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136980.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:1438   GAACGGAGGGAGUAGUACG   1456 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191550 (LOC100191550), mRNA	NA	coding protein	psRNATarget
BT033661.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   ||||||||||||||*|||= targets:1438   GAACGGAGGGAGUAGUACG   1456 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0115O22 mRNA, complete cds	NA	coding protein	psRNATarget
EU970288.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   *|||||||||||||*|||| targets:1393   AAACGGAGGGAGUAGUACA   1411 Target Full Sequence	2.5	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
EZ091483.1	ncRNA:19   CUUGCCUCCCUCAUGAUGU   1   **||*|||||||||||||| targets:99   CUACAGAGGGAGUACUACA   117 Target Full Sequence	3.0	TSA: Zea mays contig27132, mRNA sequence	NA	coding protein	psRNATarget