Search result

BaseInfo

ncRNA ID	novel_zma_miR7289
Species	Zea mays
Class	miRNA
Genome position	Chr4:232951798-232951871 [-]
Reference genome	RefGen_v4
Source	SRR2647391
Length	24
Mature sequence(if miRNA)	1 - CUAACUAAUUAUGAGGAAUGAGGU - 24
Stem-loop(if miRNA)	--           AAU     -  AAU A  C   UU   UUCAUUCUUCA   UUGGU GG   G CU AAU  A   |||||||||||   ||||| ||   | || |||  U   GAGUAAGGAGU   AAUCA UC   C GA UUA  C UG           AUU     A  AAU A  A   UA
Stem-loop sequence	UUCAUUCUUCAAAUUUGGUGGAAUGACUCAAUUUAUCAUAUUAAGACUAACUAACUAAUUAUGAGGAAUGAGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540676.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |||||||||||||||||||||||| targets:1933   ACCUCAUUCCUCAUAAUUAGUUAG   1956 Target Full Sequence	0.0	PREDICTED: Zea mays HAD-superfamily hydrolase subfamily IG 5'-nucleotidase (cl20716_1(184)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546133.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |||||||||||||||=|||||||| targets:638   ACCUCAUUCCUCAUAGUUAGUUAG   661 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT063621.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |||||||||||||||=|||||||| targets:944   ACCUCAUUCCUCAUAGUUAGUUAG   967 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174998.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |||||||||||||||=|||||||| targets:944   ACCUCAUUCCUCAUAGUUAGUUAG   967 Target Full Sequence	1.5	Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA	NA	coding protein	psRNATarget
NM_001319048.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   ||||=||||||||||=|||||||| targets:2322   ACCUUAUUCCUCAUAGUUAGUUAG   2345 Target Full Sequence	1.5	Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), mRNA	NA	coding protein	psRNATarget
XM_020549921.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   ||||=||||||||||=|||||||| targets:2260   ACCUUAUUCCUCAUAGUUAGUUAG   2283 Target Full Sequence	1.5	PREDICTED: Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068011.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   ||||=||||||||||=|||||||| targets:1219   ACCUUAUUCCUCAUAGUUAGUUAG   1242 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019K20 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238983.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |=|||||||||||||=|||||||| targets:7   AUCUCAUUCCUCAUAGUUAGUUAG   30 Target Full Sequence	1.5	Sequence 4978 from Patent EP2985353	NA	coding protein	psRNATarget
JB167314.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |=|||||||||||||=|||||||| targets:7   AUCUCAUUCCUCAUAGUUAGUUAG   30 Target Full Sequence	1.5	Sequence 4978 from Patent EP2559767	NA	coding protein	psRNATarget
HI406853.1	ncRNA:24   UGGAGUAAGGAGUAUUAAUCAAUC   1   |=|||||||||||||=|||||||| targets:7   AUCUCAUUCCUCAUAGUUAGUUAG   30 Target Full Sequence	1.5	Sequence 4978 from Patent EP2074227	NA	coding protein	psRNATarget