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BaseInfo

ncRNA ID	novel_zma_miR7286
Species	Zea mays
Class	miRNA
Genome position	Chr4:217719263-217719436 [+]
Reference genome	RefGen_v4
Source	SRR1743455
Length	22
Mature sequence(if miRNA)	153 - AAACUAUCUGAUCCAUUAGAUU - 174
Stem-loop(if miRNA)	--                                                                                    U   UCUAAUGGAUCAGAUAGUUUGCUUGCACGCUUGCACAGAAGGACUGCUUGUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   AGAUUACCUAGUCUAUCAAACGAACGUGCGAACGUGUCUUCCUGACGAACAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U UU                                                                                    A
Stem-loop sequence	UCUAAUGGAUCAGAUAGUUUGCUUGCACGCUUGCACAGAAGGACUGCUUGUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUACAAGCAGUCCUUCUGUGCAAGCGUGCAAGCAAACUAUCUGAUCCAUUAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664644.2	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:369   AAUCUAAUGGAUCAGAUGGUUU   390 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664645.2	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:369   AAUCUAAUGGAUCAGAUGGUUU   390 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008664646.2	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:369   AAUCUAAUGGAUCAGAUGGUUU   390 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA	NA	coding protein	psRNATarget
LQ235228.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:142   AAUCUAAUGGAUCAGAUGGUUU   163 Target Full Sequence	1.5	Sequence 1223 from Patent EP2985353	NA	coding protein	psRNATarget
HI403098.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:142   AAUCUAAUGGAUCAGAUGGUUU   163 Target Full Sequence	1.5	Sequence 1223 from Patent EP2074227	NA	coding protein	psRNATarget
JB163559.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||||||||||||||||=|||| targets:142   AAUCUAAUGGAUCAGAUGGUUU   163 Target Full Sequence	1.5	Sequence 1223 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||||||||||||||||=|||| targets:967   GAUCUAAUGGAUCAGAUGGUUU   988 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||||||||||||||||=|||| targets:967   GAUCUAAUGGAUCAGAUGGUUU   988 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403099.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||=|||||||||||||=|||| targets:172   AAUUUAAUGGAUCAGAUGGUUU   193 Target Full Sequence	2.5	Sequence 1224 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235229.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||=|||||||||||||=|||| targets:172   AAUUUAAUGGAUCAGAUGGUUU   193 Target Full Sequence	2.5	Sequence 1224 from Patent EP2985353	NA	coding protein	psRNATarget
JB163560.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||=|||||||||||||=|||| targets:172   AAUUUAAUGGAUCAGAUGGUUU   193 Target Full Sequence	2.5	Sequence 1224 from Patent EP2559767	NA	coding protein	psRNATarget
JB163856.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||||||||||||||||=|||| targets:166   GAUCUAAUGGAUCAGAUGGUUU   187 Target Full Sequence	1.5	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||||||||||||||||=|||| targets:166   GAUCUAAUGGAUCAGAUGGUUU   187 Target Full Sequence	1.5	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
HI403395.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||||||||||||||||=|||| targets:166   GAUCUAAUGGAUCAGAUGGUUU   187 Target Full Sequence	1.5	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163917.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   ||||||||*||||||||||||| targets:167   AAUCUAAUAGAUCAGAUAGUUU   188 Target Full Sequence	1.0	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235586.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   ||||||||*||||||||||||| targets:167   AAUCUAAUAGAUCAGAUAGUUU   188 Target Full Sequence	1.0	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
HI403456.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   ||||||||*||||||||||||| targets:167   AAUCUAAUAGAUCAGAUAGUUU   188 Target Full Sequence	1.0	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
HI403426.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||*|||||||||||||=|||| targets:165   AAUAUAAUGGAUCAGAUGGUUU   186 Target Full Sequence	2.5	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||*|||||||||||||=|||| targets:165   AAUAUAAUGGAUCAGAUGGUUU   186 Target Full Sequence	2.5	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
JB163887.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   |||*|||||||||||||=|||| targets:165   AAUAUAAUGGAUCAGAUGGUUU   186 Target Full Sequence	2.5	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   =||*|||||||||||||=|||| targets:1792   GAUAUAAUGGAUCAGAUGGUUU   1813 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   *|||||*||||||||||=|||| targets:166   UAUCUAUUGGAUCAGAUGGUUU   187 Target Full Sequence	2.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
JB163648.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   *|||||*||||||||||=|||| targets:166   UAUCUAUUGGAUCAGAUGGUUU   187 Target Full Sequence	2.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
HI403187.1	ncRNA:22   UUAGAUUACCUAGUCUAUCAAA   1   *|||||*||||||||||=|||| targets:166   UAUCUAUUGGAUCAGAUGGUUU   187 Target Full Sequence	2.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget