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BaseInfo

ncRNA ID novel_zma_miR7283
Species Zea mays
Class miRNA
Genome position Chr4:176751107-176751203 [+]
Reference genome RefGen_v4
Source SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - AUUGAUCUCAAUCCACAUAUAUUG - 24
Stem-loop(if miRNA) --       UC         A A       A  A      A   C   
  AUUGAUC  AAUCCACAU U UUGAGGU GA UGGGGU UAA UUAA
  |||||||  ||||||||| | ||||||| || |||||| ||| |||A
  UAACUGG  UUAGGUGUA A AACUCCA CU AUUCCA AUU AAUC
CA       GA         C C       C  A      C   U   
Stem-loop sequence AUUGAUCUCAAUCCACAUAUAUUGAGGUAGAAUGGGGUAUAACUUAAACUAAUUUACACCUUAAUCCACCUCAACACAUGUGGAUUAGGGUCAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403277.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123

2.5 Sequence 1402 from Patent EP2074227 NA coding protein psRNATarget
JB163738.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123

2.5 Sequence 1402 from Patent EP2559767 NA coding protein psRNATarget
LQ235407.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123

2.5 Sequence 1402 from Patent EP2985353 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115

2.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
JB163953.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115

2.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
HI403492.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115

2.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
HI403376.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
JB163837.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:69   CAAUACAUGUGGAUUGAGGUCAAU   92

2.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
LQ235205.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
HI403075.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
HI403051.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
JB163512.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI402966.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||||||||||=|||||
targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
BT084723.2
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||||||||
targets:162   CAACACAUGUGGAUUGAGAUCAAU   185

1.0 Zea mays full-length cDNA clone ZM_BFb0166K06 mRNA, complete cds NA coding protein psRNATarget
JB163411.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||*|||||||||||||
targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99

2.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||*|||||||||||||
targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99

2.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||||*||||*|||||||||||||
targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99

2.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI403308.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:113   CAACACAUGUGGAUUGAGGUCAAU   136

2.5 Sequence 1433 from Patent EP2074227 NA coding protein psRNATarget
HI403308.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||*||||||||
targets:56   CAACACAUGUGGAUUAAGAUCAAU   79

2.5 Sequence 1433 from Patent EP2074227 NA coding protein psRNATarget
LQ235438.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:113   CAACACAUGUGGAUUGAGGUCAAU   136

2.5 Sequence 1433 from Patent EP2985353 NA coding protein psRNATarget
LQ235438.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||*||||||||
targets:56   CAACACAUGUGGAUUAAGAUCAAU   79

2.5 Sequence 1433 from Patent EP2985353 NA coding protein psRNATarget
JB163769.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:113   CAACACAUGUGGAUUGAGGUCAAU   136

2.5 Sequence 1433 from Patent EP2559767 NA coding protein psRNATarget
JB163769.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||*||||||||
targets:56   CAACACAUGUGGAUUAAGAUCAAU   79

2.5 Sequence 1433 from Patent EP2559767 NA coding protein psRNATarget
JB163809.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1473 from Patent EP2559767 NA coding protein psRNATarget
LQ235478.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1473 from Patent EP2985353 NA coding protein psRNATarget
HI403198.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
JB163659.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
HI403348.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:78   CAACACAUGUGGAUUGAGGUCAAU   101

2.5 Sequence 1473 from Patent EP2074227 NA coding protein psRNATarget
JB163916.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:76   CAACACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1580 from Patent EP2559767 NA coding protein psRNATarget
LQ235585.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:76   CAACACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1580 from Patent EP2985353 NA coding protein psRNATarget
HI403455.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*||||||||||||=|||||
targets:76   CAACACAUGUGGAUUGAGGUCAAU   99

2.5 Sequence 1580 from Patent EP2074227 NA coding protein psRNATarget
EZ111052.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||***||||||||||||||||||
targets:192   CAACUCAUGUGGAUUGAGAUCAAU   215

1.0 TSA: Zea mays contig46713, mRNA sequence NA coding protein psRNATarget
EZ516950.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||***||||||||||||||||||
targets:58   CAACUCAUGUGGAUUGAGAUCAAU   81

1.0 TSA: Zea mays cultivar W22 CL342Contig1.betc, mRNA sequence NA coding protein psRNATarget
LQ239075.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||||||*||||
targets:59   CAACACAUGUGGAUUGAGACCAAU   82

2.5 Sequence 5070 from Patent EP2985353 NA coding protein psRNATarget
JB167406.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||||||*||||
targets:59   CAACACAUGUGGAUUGAGACCAAU   82

2.5 Sequence 5070 from Patent EP2559767 NA coding protein psRNATarget
HI406945.1
ncRNA:24   GUUAUAUACACCUAACUCUAGUUA   1
  |||*|*|||||||||||||*||||
targets:59   CAACACAUGUGGAUUGAGACCAAU   82

2.5 Sequence 5070 from Patent EP2074227 NA coding protein psRNATarget
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