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BaseInfo

ncRNA ID	novel_zma_miR7230
Species	Zea mays
Class	miRNA
Genome position	Chr2:233093519-233093624 [+]
Reference genome	RefGen_v4
Source	SRR2647390
Length	24
Mature sequence(if miRNA)	1 - AAUCUCAAAUAAAGUCAAUGUAUG - 24
Stem-loop(if miRNA)	--      AA                CG   AU  AAAAUCUGUC    -   U   AAUCUC  AUAAAGUCAAUGUAUG  GUG  UC          UGAU UGG U   ||||||  ||||||||||||||||  |||  ||          |||| |||   UUAGAG  UAUUUCAGUUACGUAU  CAC  AG          ACUA GCC G UA      CC                AU   -C  AUCUUAUUUU    U   U
Stem-loop sequence	AAUCUCAAAUAAAGUCAAUGUAUGCGGUGAUUCAAAAUCUGUCUGAUUGGUUGUCCGUAUCAUUUUAUUCUAGACCACUAUAUGCAUUGACUUUAUCCGAGAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137867.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =||==||||||||||||||||||| targets:1400   UAUGUAUUGACUUUAUUUGAGAUU   1423 Target Full Sequence	0.0	Zea mays Pentatricopeptide repeat-containing protein mitochondrial (LOC100192656), mRNA	NA	coding protein	psRNATarget
BT034696.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =||==||||||||||||||||||| targets:1400   UAUGUAUUGACUUUAUUUGAGAUU   1423 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0011P07 mRNA, complete cds	NA	coding protein	psRNATarget
EU961621.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =||=|=|*|||||||||||||||| targets:718   UAUGCGUCGACUUUAUUUGAGAUU   741 Target Full Sequence	2.0	Zea mays clone 237102 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150171.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =||=|=|*|||||||||||||||| targets:718   UAUGCGUCGACUUUAUUUGAGAUU   741 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276365 (gpm129), mRNA	NA	coding protein	psRNATarget
XM_020543415.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6732   UUUGUGUUGACUUUAUUUGAGAUU   6755 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543416.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6723   UUUGUGUUGACUUUAUUUGAGAUU   6746 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543419.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6460   UUUGUGUUGACUUUAUUUGAGAUU   6483 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020543420.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6457   UUUGUGUUGACUUUAUUUGAGAUU   6480 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020543417.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6453   UUUGUGUUGACUUUAUUUGAGAUU   6476 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020543422.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6451   UUUGUGUUGACUUUAUUUGAGAUU   6474 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X19, mRNA	NA	coding protein	psRNATarget
XM_020543418.1	ncRNA:24   GUAUGUAACUGAAAUAAACUCUAA   1   =*|===|||||||||||||||||| targets:6364   UUUGUGUUGACUUUAUUUGAGAUU   6387 Target Full Sequence	1.0	PREDICTED: Zea mays chromatin modification-related protein EAF1 B (LOC103637041), transcript variant X8, mRNA	NA	coding protein	psRNATarget