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BaseInfo

ncRNA ID novel_zma_miR7228
Species Zea mays
Class miRNA
Genome position Chr2:213355284-213355334 [+]
Reference genome RefGen_v4
Source SRR2647390
Length 24
Mature sequence(if miRNA) 1 - CCAUAGUCUAUGGCGCCGAGCUAU - 24
Stem-loop(if miRNA) --                    CUA
  CCAUAGUCUAUGGCGCCGAG   U
  ||||||||||||||||||||   G
  GGUAUCGGAUAUCGCGGCUC   U
GC                    UAU
Stem-loop sequence CCAUAGUCUAUGGCGCCGAGCUAUGUUAUCUCGGCGCUAUAGGCUAUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402936.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2074227 NA coding protein psRNATarget
JB163397.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2559767 NA coding protein psRNATarget
LQ235066.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2985353 NA coding protein psRNATarget
BT034188.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
BT034188.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  *|*||||||||||||||=||||||
targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  *|*||||||||||||||=||||||
targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:40   ACAGCUCGGCGCCAUAGGCUAUGG   63

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:38   ACAGCUCGGCGCCAUAGGCUAUGG   61

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  |*|||||||||||||||=||||||
targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  =||*|||||||||||||*||||||
targets:862   GUACCUCGGCGCCAUAGCCUAUGG   885

1.5 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UAUCGAGCCGCGGUAUCUGAUACC   1
  *||**||||||||||||=|||||*
targets:898   UUACGUCGGCGCCAUAGGCUAUGA   921

2.5 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
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