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BaseInfo

ncRNA ID	novel_zma_miR7223
Species	Zea mays
Class	miRNA
Genome position	Chr10:61625473-61625528 [-]
Reference genome	RefGen_v4
Source	SRR2647390
Length	24
Mature sequence(if miRNA)	33 - GCACUCGGCAAAGAAGCUUUACCA - 56
Stem-loop(if miRNA)	--                CUU    AGU   GCACUCGGCAAAGAAG   UACC   G   ||||||||||||||||   ||||   UGUGAGCCGUUUCUUC   GUGG   C AU                CGU    AUC
Stem-loop sequence	GCACUCGGCAAAGAAGCUUUACCAGUGCCUAGGUGUGCCUUCUUUGCCGAGUGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238873.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||||||*|||||||| targets:37   CGGUAAAGCUUCUUUACCGAGUGC   60 Target Full Sequence	1.5	Sequence 4868 from Patent EP2985353	NA	coding protein	psRNATarget
JB167204.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||||||*|||||||| targets:37   CGGUAAAGCUUCUUUACCGAGUGC   60 Target Full Sequence	1.5	Sequence 4868 from Patent EP2559767	NA	coding protein	psRNATarget
HI406743.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||||||*|||||||| targets:37   CGGUAAAGCUUCUUUACCGAGUGC   60 Target Full Sequence	1.5	Sequence 4868 from Patent EP2074227	NA	coding protein	psRNATarget
HI407108.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||*|||||||||||= targets:3   CGGUAAAGCUUAUUUGCCGAGUGU   26 Target Full Sequence	2.5	Sequence 5233 from Patent EP2074227	NA	coding protein	psRNATarget
JB167569.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||*|||||||||||= targets:3   CGGUAAAGCUUAUUUGCCGAGUGU   26 Target Full Sequence	2.5	Sequence 5233 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239238.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||||||||*|||||||||||= targets:3   CGGUAAAGCUUAUUUGCCGAGUGU   26 Target Full Sequence	2.5	Sequence 5233 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242089.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *|||||||||||||||*||||||= targets:16   CGGUAAAGCUUCUUUGACGAGUGU   39 Target Full Sequence	2.5	Sequence 8084 from Patent EP2985353	NA	coding protein	psRNATarget
HI409959.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *|||||||||||||||*||||||= targets:16   CGGUAAAGCUUCUUUGACGAGUGU   39 Target Full Sequence	2.5	Sequence 8084 from Patent EP2074227	NA	coding protein	psRNATarget
JB170420.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *|||||||||||||||*||||||= targets:16   CGGUAAAGCUUCUUUGACGAGUGU   39 Target Full Sequence	2.5	Sequence 8084 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   ACCAUUUCG-AAGAAACGGCUCACG   1   *||*|||||-||||||||||||||| targets:6   CGGCAAAGCCUUCUUUGCCGAGUGC   30 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*|||*|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*|||*|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*|||*|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   ACCAUUUC---GAAGAAACGGCUCACG   1   *||*||||---|||||||||||||||| targets:7   CGGCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   ACCAUUUC---GAAGAAACGGCUCACG   1   *||*||||---|||||||||||||||| targets:7   CGGCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   ACCAUUUC---GAAGAAACGGCUCACG   1   *||*||||---|||||||||||||||| targets:7   CGGCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   ACCAUUUC---GAAGAAACGGCUCACG   1   *||*||||---|||||||||||||||| targets:1090   CGGCAAAGAGGCUUCUUUGCCGAGUGC   1116 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   *||||*||*||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   ****|=|||||||||||=|||||| targets:389   ACAAAGAGCUUCUUUGCUGAGUGC   412 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   ****|=|||||||||||=|||||| targets:641   ACAAAGAGCUUCUUUGCUGAGUGC   664 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB166554.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
HI406093.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
BT065228.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
EU942429.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:905   AAGUAAAUGUUCUUUGCCGAGUGC   928 Target Full Sequence	2.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1313   AAGUAAAUGUUCUUUGCCGAGUGC   1336 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1317   AAGUAAAUGUUCUUUGCCGAGUGC   1340 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1392   AAGUAAAUGUUCUUUGCCGAGUGC   1415 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1402   AAGUAAAUGUUCUUUGCCGAGUGC   1425 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1443   AAGUAAAUGUUCUUUGCCGAGUGC   1466 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1526   AAGUAAAUGUUCUUUGCCGAGUGC   1549 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1788   AAGUAAAUGUUCUUUGCCGAGUGC   1811 Target Full Sequence	2.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget
BT036012.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|||||**||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   ****=||||*|||||||||||||| targets:34   CAAAGAAGCCUCUUUGCCGAGUGC   57 Target Full Sequence	1.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   ****=||||*|||||||||||||| targets:34   CAAAGAAGCCUCUUUGCCGAGUGC   57 Target Full Sequence	1.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   ****=||||*|||||||||||||| targets:34   CAAAGAAGCCUCUUUGCCGAGUGC   57 Target Full Sequence	1.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238171.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*=|||||*||||||||||||= targets:133   CAGCGAAGCUACUUUGCCGAGUGU   156 Target Full Sequence	2.0	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
JB166502.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*=|||||*||||||||||||= targets:133   CAGCGAAGCUACUUUGCCGAGUGU   156 Target Full Sequence	2.0	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget
HI406041.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*=|||||*||||||||||||= targets:133   CAGCGAAGCUACUUUGCCGAGUGU   156 Target Full Sequence	2.0	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020552114.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:58   GAGAGGAGCUUCUUGGCCGAGUGC   81 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC109945764), mRNA	NA	coding protein	psRNATarget
XM_020545399.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:91   GAGAGGAGCUUCUUGGCCGAGUGC   114 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC109942845), mRNA	NA	coding protein	psRNATarget
XM_008659310.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:95   GAGAGGAGCUUCUUGGCCGAGUGC   118 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC103637034), mRNA	NA	coding protein	psRNATarget
XM_020544682.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:93   GAGAGGAGCUUCUUGGCCGAGUGC   116 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC109942585), mRNA	NA	coding protein	psRNATarget
XM_008668152.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:91   GAGAGGAGCUUCUUGGCCGAGUGC   114 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC103645020), mRNA	NA	coding protein	psRNATarget
XM_020552284.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:114   GAGAGGAGCUUCUUGGCCGAGUGC   137 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC109945899), mRNA	NA	coding protein	psRNATarget
NM_001147409.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:304   GAGAGGAGCUUCUUGGCCGAGUGC   327 Target Full Sequence	2.5	Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100272957), mRNA	NA	coding protein	psRNATarget
BT039865.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:304   GAGAGGAGCUUCUUGGCCGAGUGC   327 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047J18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553151.1	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:2381   GAGAGGAGCUUCUUGGCCGAGUGC   2404 Target Full Sequence	2.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100272957), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008683186.2	ncRNA:24   ACCAUUUCGAAGAAACGGCUCACG   1   **|*==||||||||*||||||||| targets:2381   GAGAGGAGCUUCUUGGCCGAGUGC   2404 Target Full Sequence	2.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100272957), transcript variant X1, mRNA	NA	coding protein	psRNATarget