Search result

BaseInfo

ncRNA ID	osa-miRf10312-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - UCAUGGUACCUCCUCAAGGACC - NA
Stem-loop(if miRNA)	C   A         A                 AAAAAA    G      A          AGAU GCAAUU UAC GUCCUUGAG AGGUACCAUGAGAUACC      UUUA UGUAAA UUUGGUACCU    A |||||| ||| ||||||||| |||||||||||||||||      |||| |||||| |||||||||| CGUUAA AUG CAGGAACUC UCCAUGGUACUCUAUGG      AAAU ACAUUU AAACCAUGGA    C       A   C         C                 -AAAAA    A      -          GAAC
Stem-loop sequence	GCAAUUCUACAGUCCUUGAGAAGGUACCAUGAGAUACCAAAAAAUUUAGUGUAAAAUUUGGUACCUAGAUACCAAGAGGUACCAAAUUUACAAUAAAAAAAAGGUAUCUCAUGGUACCUCCUCAAGGACCGUAAAAUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015757723.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   ||||=||||||||||||||||| targets:435   GGUCUUUGAGGAGGUACCAUGA   456 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
XM_015760251.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   *||||||||||||||=|||||| targets:49   UGUCCUUGAGGAGGUGCCAUGA   70 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107279278), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107279278)	coding protein	psRNATarget
XM_015786627.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   |||||||||||||*|||||||| targets:547   GGUCCUUGAGGAGAUACCAUGA   568 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK072846.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   |||||||*|||||||||||||| targets:1697   GGUCCUUAAGGAGGUACCAUGA   1718 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   |||||||*|||||||||||||| targets:2078   GGUCCUUAAGGAGGUACCAUGA   2099 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   |||||||*|||||||||||||| targets:2122   GGUCCUUAAGGAGGUACCAUGA   2143 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
AK288582.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   ||||||||*||||||||||||| targets:2825   GGUCCUUGUGGAGGUACCAUGA   2846 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
AK288182.1	ncRNA:22   CCAGGAACUCCUCCAUGGUACU   1   *|||||||||||||||||||*| targets:1300   UGUCCUUGAGGAGGUACCAUAA   1321 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget