Search result

BaseInfo

ncRNA ID osa-miRf10297-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - CAAUGUCGUUGGCGCCGAGGA - NA
Stem-loop(if miRNA)    --A   UA                        AC     A G   A UUAAAAGAAUAUAUUUGUAGCAGA
GGG   UGG  CCAAUGUCGUUGGCGCCGAGGACC  UUUGU A AAA A                        A
|||   |||  ||||||||||||||||||||||||  ||||| | ||| |                        A
CCC   GCC  GGUUGCAGUAAUCGUGGUUCCUGG  AUAAA C AUU A                        A
   AGA   GC                        --     - -   - AUAGAGAAAUAAUGUUUAUCUAGA
Stem-loop sequence GGGAUGGUACCAAUGUCGUUGGCGCCGAGGACCACUUUGUAAGAAAAAUUAAAAGAAUAUAUUUGUAGCAGAAAAAGAUCUAUUUGUAAUAAAGAGAUAAUUACAAAUAGGUCCUUGGUGCUAAUGACGUUGGCGCCGAGACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015761194.1
ncRNA:21   AGGAGCCGCGGUUGCUGUAAC   1
  ||||||*||||||||||||*|
targets:1421   UCCUCGACGCCAACGACAUGG   1441

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g25630 (LOC4327187), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At5g25630(LOC4327187) coding protein psRNATarget
XM_015761187.1
ncRNA:21   AGGAGCCGCGGUUGCUGUAAC   1
  ||||||*||||||||||||*|
targets:1421   UCCUCGACGCCAACGACAUGG   1441

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g25630 (LOC4327187), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g25630(LOC4327187) coding protein psRNATarget
XM_015761181.1
ncRNA:21   AGGAGCCGCGGUUGCUGUAAC   1
  ||||||*||||||||||||*|
targets:1306   UCCUCGACGCCAACGACAUGG   1326

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g25630 (LOC4327187), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g25630(LOC4327187) coding protein psRNATarget
AK105248.1
ncRNA:21   AGGAGCCGCGGUUGCUGUAAC   1
  ||||||*||||||||||||*|
targets:1308   UCCUCGACGCCAACGACAUGG   1328

2.5 Oryza sativa Japonica Group cDNA clone:001-114-A12, full insert sequence NA coding protein psRNATarget