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BaseInfo

ncRNA ID osa-miRf10278-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - AGGUAUCAUCCCGUCUGAACG - NA
Stem-loop(if miRNA)      CCG   A    UA                C   GC   A      AUAGAUG    CU -A        UCGAACGGGAUGGUACCUCUG
GGUAU   GUU AGAC  GAUGAUACCUCAGAGG AUC  CUA UACCUG       UCAG  G  UACCCCGU                     A
|||||   ||| ||||  |||||||||||||||| |||  ||| ||||||       ||||  |  ||||||||
CCAUA   CAA UCUG  CUACUAUGGAGUCUCC UAG  GAU AUGGAC       CCAU  A  AGGCUAUG                     G
     AUG   G    CC                A   AA   -      -------    -- GU        GAUAAUCCAUGGUCUGUUAUG
Stem-loop sequence GGUAUCCGGUUAAGACUAGAUGAUACCUCAGAGGCAUCGCCUAAUACCUGAUAGAUGUCAGCUGAUACCCCGUUCGAACGGGAUGGUACCUCUGAGGUAUUGUCUGGUACCUAAUAGGUAUCGGAUGAUACCCAGGUAUAGAAGAUACCUCUGAGGUAUCAUCCCGUCUGAACGUAAUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403673.1
ncRNA:21   GCAAGUCUGCCCUACUAUGGA   1
  |||||=||=||||||||||||
targets:26   CGUUCGGAUGGGAUGAUACCU   46

2.5 Sequence 1798 from Patent EP2074227 NA coding protein psRNATarget
JB164134.1
ncRNA:21   GCAAGUCUGCCCUACUAUGGA   1
  |||||=||=||||||||||||
targets:26   CGUUCGGAUGGGAUGAUACCU   46

2.5 Sequence 1798 from Patent EP2559767 NA coding protein psRNATarget
LQ235803.1
ncRNA:21   GCAAGUCUGCCCUACUAUGGA   1
  |||||=||=||||||||||||
targets:26   CGUUCGGAUGGGAUGAUACCU   46

2.5 Sequence 1798 from Patent EP2985353 NA coding protein psRNATarget
AK072384.1
ncRNA:21   GCAAGUCUGCCCUACUAUGGA   1
  |||||=|||*|||||||||||
targets:1034   CGUUCGGACAGGAUGAUACCU   1054

2.5 Oryza sativa Japonica Group cDNA clone:J023078E13, full insert sequence NA coding protein psRNATarget