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BaseInfo

ncRNA ID	ath-miR837-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:6520941-6521124 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	113 - AAACGAACAAAAAACUGAUGG - 133
Stem-loop(if miRNA)	U            C         C                A           U         C             A       UUUU   UU  UUUUGAUAAAUA UUUUGUUUG UUACAAGUAUAAAGUC UCAUGUUUUUU CAUCAGUUU UUGUUCGUUUCAA AUUAUGA    UGU  A  |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||    |||  AAGAUUAUUUAU AAAAUAAAU AAUGUUCAUAUUUCAG AGUACAAAAAG GUAGUCAAA AACAAGCAAAGUU UAAUACU    ACA  C A            A         A                G           -         A             C       ---C   UU
Stem-loop sequence	UUUUUGAUAAAUACUUUUGUUUGCUUACAAGUAUAAAGUCAUCAUGUUUUUUUCAUCAGUUUCUUGUUCGUUUCAAAAUUAUGAUUUUUGUUUACUUACACUCAUAAUCUUGAAACGAACAAAAAACUGAUGGAAAAACAUGAGGACUUUAUACUUGUAAAUAAAUAAAAAUAUUUAUUAGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK230268.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:896   UCAUCACUUUUUUGUUCGUUU   916 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-28-B17	NA	coding protein	psRNATarget
NM_129804.4	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:290   UCAUCACUUUUUUGUUCGUUU   310 Target Full Sequence	1.0	Arabidopsis thaliana lateral organ boundaries-domain 16 (LBD16), mRNA	lateral organ boundaries-domain 16(LBD16)	coding protein	psRNATarget
AF345339.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:163   UCAUCACUUUUUUGUUCGUUU   183 Target Full Sequence	1.0	Arabidopsis thaliana MHK10.15/At2g42430 mRNA, complete cds	NA	coding protein	psRNATarget
AF447890.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:186   UCAUCACUUUUUUGUUCGUUU   206 Target Full Sequence	1.0	Arabidopsis thaliana LOB DOMAIN 16 (LBD16) mRNA, complete cds	NA	coding protein	psRNATarget
AF410334.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:201   UCAUCACUUUUUUGUUCGUUU   221 Target Full Sequence	1.0	Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds	NA	coding protein	psRNATarget
AB473851.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   =|||||*|||||||||||||| targets:161   UCAUCACUUUUUUGUUCGUUU   181 Target Full Sequence	1.0	Arabidopsis thaliana ASL18 mRNA for ASYMMETRIC LEAVES2-like 18 protein, complete cds	NA	coding protein	psRNATarget
BX824177.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   |=|||*|||||*||||||||| targets:1169   CUAUCUGUUUUCUGUUCGUUU   1189 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_125644.3	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   **||||*|||||||||=|||| targets:147   AAAUCAUUUUUUUGUUUGUUU   167 Target Full Sequence	2.5	Arabidopsis thaliana end binding protein 1B (EB1B), mRNA	end binding protein 1B(EB1B)	coding protein	psRNATarget
AK117640.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   **||||*|||||||||=|||| targets:147   AAAUCAUUUUUUUGUUUGUUU   167 Target Full Sequence	2.5	Arabidopsis thaliana At5g62500 mRNA for putative microtubule-associated protein EB1, complete cds, clone: RAFL17-29-O03	NA	coding protein	psRNATarget
AY084598.1	ncRNA:21   GGUAGUCAAAAAACAAGCAAA   1   **||||*|||||||||=|||| targets:40   AAAUCAUUUUUUUGUUUGUUU   60 Target Full Sequence	2.5	Arabidopsis thaliana clone 112876 mRNA, complete sequence	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).