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BaseInfo

ncRNA ID	ath-miRf10073-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CUCGACCAGGGGGUCGAGUG - NA
Stem-loop(if miRNA)	G          AGG           UG   --------------   G GACAAGUCGGAGUCUUCUUCUCUUUCUCAU CG UACUCGACCC   UGGUCGAGUAG  GGU              CGA U                              G || ||||||||||   |||||||||||  |||              ||| | GU GUGAGCUGGG   ACCAGCUCAUC  UCG              AAG A                              C   G          -GG           UU   UAGUAGCGAAAUCU   - AGAGCUAAGGCGUGAGUUGGUCUGUAAGCU
Stem-loop sequence	CGGUACUCGACCCAGGUGGUCGAGUAGUGGGUCGAGUGACAAGUCGGAGUCUUCUUCUCUUUCUCAUGCUCGAAUGUCUGGUUGAGUGCGGAAUCGAGAAGAAUCUAAAGCGAUGAUGCUUUCUACUCGACCAGGGGGUCGAGUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:91   CACUCGACCCCCUGGUCGAG   110 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:231   CACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||||||||||||||||||| targets:182   UACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:231   CACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||||||||||||||||||| targets:182   UACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:125   CACUCGACCCCCUGGUCGAG   144 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:500   CACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:500   CACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||| targets:1572   CACUCGACCCCCUGGUCGAG   1591 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||||||||||||||||||| targets:309   UACUCGACCCCCUGGUCGAG   328 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||||*|||||||||||||| targets:302   UACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||||*|||||||||||||| targets:302   UACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =||*|||||||||||||||| targets:584   UACYCGACCCCCUGGUCGAG   603 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =|||||||||||*||||||| targets:137   UACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =|||||||||||*||||||| targets:137   UACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =|||||||||||*||||||| targets:188   UACUCGACCCCCAGGUCGAG   207 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||*|||||||| targets:490   CACUCGACCCCGUGGUCGAG   509 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||*|||||||| targets:536   CACUCGACCCCAUGGUCGAG   555 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   ||||||||||||*||||||| targets:1105   CACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   |||||||||||*|||||||| targets:1210   CACUCGACCCCGUGGUCGAG   1229 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:20   GUGAGCUGGGGGACCAGCUC   1   =|||=||||||||||||*|| targets:143   UACUUGACCCCCUGGUCUAG   162 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget