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BaseInfo

ncRNA ID	novel_zma_miR6514
Species	Zea mays
Class	miRNA
Genome position	Chr9:28024933-28024993 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - CACCGGACUGUCAGGUGUAGCACC - 24
Stem-loop(if miRNA)	--        U   A     AG           CACCGGAC GUC GGUGU  CACCGGACA   |||||||| ||| |||||  ||||||||G   GUGGCCUG CAG CCACG  GUGGCCUGU GU        U   G     CG
Stem-loop sequence	CACCGGACUGUCAGGUGUAGCACCGGACAGUGUCCGGUGGCGCACCGGACUGUCCGGUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069074.2	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||||*||||*|||||||||||| targets:681   GGUGCUUCACCGGACAGUCCGGUG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||-||||||*|||||||||||| targets:31   GGUG-UACACCGGACAGUCCGGUG   53 Target Full Sequence	1.5	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||-||||||*|||||||||||| targets:31   GGUG-UACACCGGACAGUCCGGUG   53 Target Full Sequence	1.5	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||-||||||*|||||||||||| targets:31   GGUG-UACACCGGACAGUCCGGUG   53 Target Full Sequence	1.5	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||||||||||||||| targets:496   CCUGGUGCACCUGACAGUCCGGUG   519 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||||||||||||||| targets:496   CCUGGUGCACCUGACAGUCCGGUG   519 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||-|=||||*|||||||||||| targets:183   GGUG-UGCACCGGACAGUCCGGUG   205 Target Full Sequence	2.5	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   |*||*|=||||*|||||||||||| targets:822   GCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   |*||*|=||||*|||||||||||| targets:822   GCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||*|||||||||||| targets:829   CCUGGUGCACCGGACAGUCCGGUG   852 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   *|||*|=||||*|||||||||||| targets:148   AGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	2.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   *|||*|=||||*|||||||||||| targets:148   AGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	2.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   *|||*|=||||*|||||||||||| targets:148   AGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	2.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||**|||||*|||||||||||| targets:95   GGUGGCACACCGGACAGUCCGGUG   118 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   ||||**|||||*|||||||||||| targets:798   GGUGGCACACCGGACAGUCCGGUG   821 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||*|||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||*|||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CCACGAUGUGGACUGUCAGGCCAC   1   **||*|=||||*|||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget