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BaseInfo

ncRNA ID	novel_zma_miR6510
Species	Zea mays
Class	miRNA
Genome position	Chr5:16351657-16351791 [-]
Reference genome	RefGen_v4
Source	SRR2647386;SRR2647389
Length	24
Mature sequence(if miRNA)	1 - CGGUCCGCGACCUGGUGCAGGAGU - 24
Stem-loop(if miRNA)	U    --GG     -       G     CA    G     --    G       A C    GU   -   G  CUCU    UCAGG CGCGGAC GUCCG  GCCU GGGCC  GGAC GUCCGCG C UGGC  GAG GCG C  ||||    ||||| ||||||| |||||  |||| |||||  |||| ||||||| | ||||  ||| |||  GAGG    GGUCC GCGCCUG CAGGC  CGGG UCCGG  CCUG UAGGUGC G ACUG  CUC CGC G U    ACGU     A       G     --    G     CG    G       - A    GU   U   G
Stem-loop sequence	UCUCUGGUCAGGCGCGGACGGUCCGCAGCCUGGGGCCGGACGGUCCGCGACCUGGCGUGAGGCGGCGGCGCUCUCUGGUCAAGCGUGGAUGGUCCGCGGCCUGGGGCCGGACGGUCCGCGACCUGGUGCAGGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170229.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||=|||=||||||||=|||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCG   28 Target Full Sequence	2.5	Sequence 7893 from Patent EP2559767	NA	coding protein	psRNATarget
HI409768.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||=|||=||||||||=|||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCG   28 Target Full Sequence	2.5	Sequence 7893 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241898.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||=|||=||||||||=|||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCG   28 Target Full Sequence	2.5	Sequence 7893 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241452.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||||||=|||||||*||||||| targets:21   GCUCCUGCGCCAGGUCACGGACCG   44 Target Full Sequence	2.5	Sequence 7447 from Patent EP2985353	NA	coding protein	psRNATarget
HI409322.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||||||=|||||||*||||||| targets:21   GCUCCUGCGCCAGGUCACGGACCG   44 Target Full Sequence	2.5	Sequence 7447 from Patent EP2074227	NA	coding protein	psRNATarget
JB169783.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||||||=|||||||*||||||| targets:21   GCUCCUGCGCCAGGUCACGGACCG   44 Target Full Sequence	2.5	Sequence 7447 from Patent EP2559767	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|*|||||=|||||||||||||=| targets:60   GCCCCUGCGCCAGGUCGCGGACUG   83 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   UGA---GGACGUGGUCCAGCGCCUGGC   1   *||---|||||=||||||||||||=|| targets:3   CCUAGCCCUGCGCCAGGUCGCGGAUCG   29 Target Full Sequence	2.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   UGA---GGACGUGGUCCAGCGCCUGGC   1   *||---|||||=||||||||||||=|| targets:3   CCUAGCCCUGCGCCAGGUCGCGGAUCG   29 Target Full Sequence	2.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   UGA---GGACGUGGUCCAGCGCCUGGC   1   *||---|||||=||||||||||||=|| targets:3   CCUAGCCCUGCGCCAGGUCGCGGAUCG   29 Target Full Sequence	2.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
EZ052868.1	ncRNA:24   UGAGGACGUGGUCCAGCGCCUGGC   1   =|||||||*||||||||||*|||| targets:552   GCUCCUGCUCCAGGUCGCGAACCG   575 Target Full Sequence	2.5	TSA: Zea mays contig53989, mRNA sequence	NA	coding protein	psRNATarget