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BaseInfo

ncRNA ID	novel_zma_miR6509
Species	Zea mays
Class	miRNA
Genome position	Chr10:149493474-149493608 [-]
Reference genome	RefGen_v4
Source	SRR2647386
Length	23
Mature sequence(if miRNA)	1 - AGAUUGUAUUGUUUGUAGAGUAU - 23
Stem-loop(if miRNA)	--                          AAAAAA  UGCAAAAUAGUGUUUAUAGUGACCAUAUAGGUGC   ACUCUAUAAAUAGUACAAUCUACAAU      GA                                  A   ||||||||||||||||||||||||||      ||   UGAGAUGUUUGUUAUGUUAGAUGUUA      GU                                  A UA                          -----C  UAAUACAAAAACCACUACUCACCUGAUGACAUGU
Stem-loop sequence	ACUCUAUAAAUAGUACAAUCUACAAUAAAAAAGAUGCAAAAUAGUGUUUAUAGUGACCAUAUAGGUGCAAUGUACAGUAGUCCACUCAUCACCAAAAACAUAAUUGCAUUGUAGAUUGUAUUGUUUGUAGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008652546.2	ncRNA:23   UAU--GAGAUGUUUGUUAUGUUAGA   1   |||--||||||||||||||=||||| targets:1625   AUAAACUCUACAAACAAUAUAAUCU   1649 Target Full Sequence	1.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100191180), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971278.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||||||||||||=||| targets:1358   ACACUCUACAAACAAUACAGUCU   1380 Target Full Sequence	1.5	Zea mays clone 361257 mRNA sequence	NA	coding protein	psRNATarget
EZ079964.1	ncRNA:23   UAUG--AGAUGUUUGUUAUGUUAGA   1   =|||--||||||||||||||||||| targets:42   GUACAAUCUACAAACAAUACAAUCU   66 Target Full Sequence	2.5	TSA: Zea mays contig15603, mRNA sequence	NA	coding protein	psRNATarget
NM_001138706.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1801   ACACUCUACGAACAAUACAGUCU   1823 Target Full Sequence	2.5	Zea mays Mitochondrial substrate carrier family protein (LOC100193603), mRNA	NA	coding protein	psRNATarget
BT035915.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1801   ACACUCUACGAACAAUACAGUCU   1823 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0088C04 mRNA, complete cds	NA	coding protein	psRNATarget
BT043206.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1610   ACACUCUACGAACAAUACAGUCU   1632 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120O12 mRNA, complete cds	NA	coding protein	psRNATarget
EU973081.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1490   ACACUCUACGAACAAUACAGUCU   1512 Target Full Sequence	2.5	Zea mays clone 392931 mRNA sequence	NA	coding protein	psRNATarget
XM_020544886.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1462   ACACUCUACGAACAAUACAGUCU   1484 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (LOC100193603), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663204.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1376   ACACUCUACGAACAAUACAGUCU   1398 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (LOC100193603), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063267.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   |*|||||||=|||||||||=||| targets:1348   ACACUCUACGAACAAUACAGUCU   1370 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0045F13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ080788.1	ncRNA:23   UAUGAGAUGUUUGUUAUGUUAGA   1   **|||=|*||||||||||||||| targets:32   CCACUUUCCAAACAAUACAAUCU   54 Target Full Sequence	2.0	TSA: Zea mays contig16427, mRNA sequence	NA	coding protein	psRNATarget